RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 SPATA31D3P0C874 917 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 ADRA1BP35368 520 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 EPHA5P54756 1037 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 NME3Q13232 169 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 LONRF2Q1L5Z9 754 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 ZC3H12AQ5D1E8 599 aaKnown RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 BRMS1LQ5PSV4 323 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 ARTNQ5T4W7 220 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 SCYL2Q6P3W7 929 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 SPATA31D4Q6ZUB0 917 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 PRELID2Q8N945 189 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 HSPH1Q92598 858 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 RNF25Q96BH1 459 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 FCRL2Q96LA5 508 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 KCTD15Q96SI1 283 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 CDK5RAP1Q96SZ6 601 aaKnown RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 ZNF670Q9BS34 389 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 TTYH1Q9H313 450 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 ZNF576Q9H609 170 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 ZNF334Q9HCZ1 680 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 GPATCH2LQ9NWQ4 482 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS52-220ENST00000493674 RCOR3Q9P2K3 495 aaPredicted RBP13.15□□□□□ -0.3
VPS52-220ENST00000493674 TLR6Q9Y2C9 796 aa13.15□□□□□ -0.3
VPS52-220ENST00000493674 PRRC2BQ5JSZ5 2229 aaKnown RBP13.15□□□□□ -0.31
VPS52-220ENST00000493674 KCNU1A8MYU2 1149 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 TLR5O60602 858 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 OLFM2O95897 454 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 OAS1P00973 400 aaKnown RBP13.14□□□□□ -0.31
VPS52-220ENST00000493674 GBP1P32455 592 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 CA8P35219 290 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 CETN2P41208 172 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 CDH6P55285 790 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 TUBB4BP68371 445 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 RING1Q06587 406 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 ADCY2Q08462 1091 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 C2orf54Q08AI8 447 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 KCNC3Q14003 757 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 TRIP4Q15650 581 aaPredicted RBP13.14□□□□□ -0.31
VPS52-220ENST00000493674 BBS12Q6ZW61 710 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 ADGRD2Q7Z7M1 963 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 CCDC50Q8IVM0 306 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 RNF139Q8WU17 664 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 MAIP1Q8WWC4 291 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 CCSER2Q9H7U1 834 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 MAN1C1Q9NR34 630 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS52-220ENST00000493674 TRPM5Q9NZQ8 1165 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 SFMBT1Q9UHJ3 866 aa13.14□□□□□ -0.31
VPS52-220ENST00000493674 MAGED2Q9UNF1 606 aaPredicted RBP13.14□□□□□ -0.31
VPS52-220ENST00000493674 COL6A3P12111 3177 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 KRIT1O00522 736 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 MSI1O43347 362 aaKnown RBP13.13□□□□□ -0.31
VPS52-220ENST00000493674 PHF2O75151 1096 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 SLC34A2O95436 690 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 LRG1P02750 347 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 HNRNPA1P09651 372 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS52-220ENST00000493674 KRT10P13645 584 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 EPCAMP16422 314 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 ZNF135P52742 658 aaPredicted RBP13.13□□□□□ -0.31
VPS52-220ENST00000493674 NRG1Q02297 640 aaPredicted RBP13.13□□□□□ -0.31
VPS52-220ENST00000493674 DUSP6Q16828 381 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 EFHC2Q5JST6 749 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 SLC9A4Q6AI14 798 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 SND1Q7KZF4 910 aaKnown RBP eCLIP13.13□□□□□ -0.31
VPS52-220ENST00000493674 MAP7D3Q8IWC1 876 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 PQLC3Q8N755 202 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 KCTD6Q8NC69 237 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 GDPD5Q8WTR4 605 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 ARNTL2Q8WYA1 636 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 RNF157Q96PX1 679 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 AP1M1Q9BXS5 423 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 MAGEB5Q9BZ81 275 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 OSBPL2Q9H1P3 480 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 DHX35Q9H5Z1 703 aaKnown RBP13.13□□□□□ -0.31
VPS52-220ENST00000493674 LRRC19Q9H756 370 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 CERS4Q9HA82 394 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 PRDM16Q9HAZ2 1276 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 TMPRSS4Q9NRS4 437 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 MARCH2Q9P0N8 246 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 NUDT5Q9UKK9 219 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 NEU3Q9UQ49 428 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 HBS1LQ9Y450 684 aaKnown RBP13.13□□□□□ -0.31
VPS52-220ENST00000493674 MIA3Q5JRA6 1907 aa13.13□□□□□ -0.31
VPS52-220ENST00000493674 BRWD1Q9NSI6 2320 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 SYNJ2BP-COX16A0A087WUM0 186 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 BHMG1C9JSJ3 638 aaPredicted RBP13.12□□□□□ -0.31
VPS52-220ENST00000493674 TJP3O95049 919 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 TBX18O95935 607 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 SLC2A3P11169 496 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 HOXC13P31276 330 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 CCR1P32246 355 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 HCAR3P49019 387 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 EFEMP1Q12805 493 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 MMRN1Q13201 1228 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 DPYSQ14117 519 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 KRT81Q14533 505 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 ARL13BQ3SXY8 428 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 ANKRD20A8PQ5CZ79 823 aa13.12□□□□□ -0.31
VPS52-220ENST00000493674 PPM1LQ5SGD2 360 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms