RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ALADP13716 330 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 MATN1P21941 496 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 IGHMBP2P38935 993 aaKnown RBP6.13□□□□□ -1.43
USP48-209ENST00000487880 JAK3P52333 1124 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 C4orf46Q504U0 113 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 ACSM6Q6P461 480 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 OR4N4Q8N0Y3 316 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 GALNT4Q8N4A0 578 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 MYCT1Q8N699 235 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 OR52L2PQ8NGH6 319 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 OTUD7AQ8TE49 926 aaPredicted RBP6.13□□□□□ -1.43
USP48-209ENST00000487880 SLC22A17Q8WUG5 538 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 GLMPQ8WWB7 406 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 NPIPB3Q92617 1050 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 NELL1Q92832 810 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 ZG16BQ96DA0 208 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 MCRS1Q96EZ8 462 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 FYTTD1Q96QD9 318 aaKnown RBP6.13□□□□□ -1.43
USP48-209ENST00000487880 PSMD1Q99460 953 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 PABPC3Q9H361 631 aaKnown RBP6.13□□□□□ -1.43
USP48-209ENST00000487880 USP29Q9HBJ7 922 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 PCDHB2Q9Y5E7 798 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 SPATA31A1Q5TZJ5 1347 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 LINC01548A6NM66 108 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 TISP43B9A030 160 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 ACTL6BO94805 426 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 C1RP00736 705 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 GYS1P13807 737 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 DUSP1P28562 367 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 CDK7P50613 346 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 SMN1Q16637 294 aaKnown RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 P3H1Q32P28 736 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 SPATA31A6Q5VVP1 1343 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 SULT6B1Q6IMI4 303 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 JMJD6Q6NYC1 403 aaPredicted RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 C16orf89Q6UX73 402 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 ZNF788Q6ZQV5 615 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 DCDC5Q6ZRR9 648 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 CHSY1Q86X52 802 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 SLC44A2Q8IWA5 706 aaPredicted RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 SMC5Q8IY18 1101 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 ADAMTS18Q8TE60 1221 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 HASPINQ8TF76 798 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 TRAPPC12Q8WVT3 735 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 LTV1Q96GA3 475 aaPredicted RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 EIF3CQ99613 913 aaKnown RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 DDX23Q9BUQ8 820 aaKnown RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 RNF26Q9BY78 433 aaPredicted RBP6.12□□□□□ -1.43
USP48-209ENST00000487880 CDCP1Q9H5V8 836 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 MLXIPQ9HAP2 919 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 ABHD10Q9NUJ1 306 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 FBXO28Q9NVF7 368 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 DAPP1Q9UN19 280 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 CNTN6Q9UQ52 1028 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 RIPOR2Q9Y4F9 1068 aa6.12□□□□□ -1.43
USP48-209ENST00000487880 WIPF3A6NGB9 483 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 SMIM22K7EJ46 135 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 CLIC1O00299 241 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 IPO5O00410 1097 aaKnown RBP6.11□□□□□ -1.43
USP48-209ENST00000487880 FYB1O15117 783 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 PIP5K1CO60331 668 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 AKT1P31749 480 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 WDR5P61964 334 aaKnown RBP6.11□□□□□ -1.43
USP48-209ENST00000487880 AP2B1P63010 937 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 KCNB1Q14721 858 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 MFSD13AQ14CX5 517 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 BTBD16Q32M84 506 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 PRAMEF17Q5VTA0 474 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 ANO1Q5XXA6 986 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 KRT27Q7Z3Y8 459 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 SEMA6DQ8NFY4 1073 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 SCAMP5Q8TAC9 235 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 HIC2Q96JB3 615 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 HERPUD2Q9BSE4 406 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 SORBS1Q9BX66 1292 aaKnown RBP6.11□□□□□ -1.43
USP48-209ENST00000487880 PPCSQ9HAB8 311 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 C11orf21Q9P2W6 132 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 ZBTB1Q9Y2K1 713 aa6.11□□□□□ -1.43
USP48-209ENST00000487880 KIF28PB7ZC32 967 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 UBE2Q2LH0YL09 131 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 HALP42357 657 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 DHX8Q14562 1220 aaKnown RBP6.1□□□□□ -1.43
USP48-209ENST00000487880 AAK1Q2M2I8 961 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 TTC22Q5TAA0 569 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 ATPAF1Q5TC12 328 aaPredicted RBP6.1□□□□□ -1.43
USP48-209ENST00000487880 NFRKBQ6P4R8 1299 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 TMEM65Q6PI78 240 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 KLHL17Q6TDP4 642 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 SERPINA13PQ6UXR4 307 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 ZNF398Q8TD17 642 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 PNISRQ8TF01 805 aaKnown RBP6.1□□□□□ -1.43
USP48-209ENST00000487880 FAR2Q96K12 515 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 CCDC17Q96LX7 622 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 HS6ST2Q96MM7 605 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 ASB2Q96Q27 587 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 MYLK2Q9H1R3 596 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 PCDHB7Q9Y5E2 793 aa6.1□□□□□ -1.43
USP48-209ENST00000487880 MORC2Q9Y6X9 1032 aaPredicted RBP6.1□□□□□ -1.43
USP48-209ENST00000487880 PRRT4C9JH25 899 aa6.09□□□□□ -1.43
USP48-209ENST00000487880 M0QYT0 321 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms