RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 GON4LQ3T8J9 2241 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 GNA14O95837 355 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 NDUFV2P19404 249 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 DHPSP49366 369 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 CETN1Q12798 172 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 KCNH2Q12809 1159 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 ENPP2Q13822 863 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 BYSLQ13895 437 aaKnown RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 CNGA2Q16280 664 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 PEAR1Q5VY43 1037 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 BSPRYQ5W0U4 402 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 PMF1Q6P1K2 205 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 MSANTD2Q6P1R3 559 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 LPCAT2Q7L5N7 544 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 FMNL3Q8IVF7 1028 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 SIX6OS1Q8N1H7 587 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 TRIML1Q8N9V2 468 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 RBBP8NLQ8NC74 664 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 IPO4Q8TEX9 1081 aaKnown RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 PIWIL1Q96J94 861 aaKnown RBP17.05■□□□□ 0.32
COL9A3-208ENST00000469802 CNTN6Q9UQ52 1028 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 PCDHB4Q9Y5E5 795 aa17.05■□□□□ 0.32
COL9A3-208ENST00000469802 ASCC3Q8N3C0 2202 aaKnown RBP17.04■□□□□ 0.32
COL9A3-208ENST00000469802 PATE3B3GLJ2 98 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 BRD2P25440 801 aaKnown RBP17.04■□□□□ 0.32
COL9A3-208ENST00000469802 PTGER3P43115 390 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 STX17P56962 302 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 STILQ15468 1287 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 GEN1Q17RS7 908 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 RNF43Q68DV7 783 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 PGBD3Q8N328 593 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 IRGQQ8WZA9 623 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 EDEM1Q92611 657 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 KREMEN1Q96MU8 473 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 LSM14BQ9BX40 385 aaKnown RBP17.04■□□□□ 0.32
COL9A3-208ENST00000469802 ABCC13Q9NSE7 274 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 CACNA2D2Q9NY47 1150 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 EVLQ9UI08 416 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-208ENST00000469802 CLEC4EQ9ULY5 219 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 ACACBO00763 2458 aa17.04■□□□□ 0.32
COL9A3-208ENST00000469802 TPRP12270 2363 aaKnown RBP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 M0QYV0 167 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 NPC1O15118 1278 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 LATS1O95835 1130 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 IGLV3-27P01718 113 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 AFPP02771 609 aaKnown RBP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 HOXD9P28356 352 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 RPL34P49207 117 aaKnown RBP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 SDE2Q6IQ49 451 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 RRAGAQ7L523 313 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 ANKS1BQ7Z6G8 1248 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 TMEFF1Q8IYR6 380 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 EHBP1Q8NDI1 1231 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 MRGPRX1Q96LB2 322 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 SLC2A11Q9BYW1 496 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 THAP10Q9P2Z0 257 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 SFMBT1Q9UHJ3 866 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.03■□□□□ 0.32
COL9A3-208ENST00000469802 RAD54BQ9Y620 910 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 CACNA1EQ15878 2313 aa17.03■□□□□ 0.32
COL9A3-208ENST00000469802 IGHV1OR15-9A0A0B4J2B8 117 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 WASH3PC4AMC7 463 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 KHNYNO15037 678 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 MAP3K13O43283 966 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 MSI1O43347 362 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 CALCAP01258 141 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 CYBBP04839 570 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 LCP1P13796 627 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 HOXD12P35452 270 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 DPP6P42658 865 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 HARS2P49590 506 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 RGS7P49802 495 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 ZNF445P59923 1031 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 EIF4HQ15056 248 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 LYSMD4Q5XG99 296 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 ARMCX6Q7L4S7 300 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 SYT12Q8IV01 421 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 RNF139Q8WU17 664 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 PIGKQ92643 395 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 HSFY1Q96LI6 401 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 MED15Q96RN5 788 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 SRRTQ9BXP5 876 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 INTS2Q9H0H0 1204 aaKnown RBP17.02■□□□□ 0.32
COL9A3-208ENST00000469802 TMEM74BQ9NUR3 256 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 KIAA1468Q9P260 1216 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 STON1Q9Y6Q2 735 aa17.02■□□□□ 0.32
COL9A3-208ENST00000469802 CHD8Q9HCK8 2581 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 CDX4O14627 284 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-208ENST00000469802 AP5Z1O43299 807 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 ZNF217O75362 1048 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 IL12RB1P42701 662 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 UBE2HP62256 183 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 RPL6Q02878 288 aaKnown RBP17.01■□□□□ 0.31
COL9A3-208ENST00000469802 MEA1Q16626 185 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 TMEM215Q68D42 235 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 SLC36A4Q6YBV0 504 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 CLEC4CQ8WTT0 213 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 DDI1Q8WTU0 396 aa17.01■□□□□ 0.31
COL9A3-208ENST00000469802 SLC6A17Q9H1V8 727 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms