RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 PPIGQ13427 754 aaKnown RBP eCLIP6.91□□□□□ -1.31e-7■■□□□ 13.3
PTCD3-208ENST00000469585 ZNF267Q14586 743 aaPredicted RBP6.91□□□□□ -1.3
PTCD3-208ENST00000469585 PTGISQ16647 500 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 LRRC26Q2I0M4 334 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 KIAA0753Q2KHM9 967 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 UBXN11Q5T124 520 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 LRCH2Q5VUJ6 765 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 MOXD1Q6UVY6 613 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 DIS3L2Q8IYB7 885 aaKnown RBP6.91□□□□□ -1.3
PTCD3-208ENST00000469585 PQLC1Q8N2U9 271 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 NSUN7Q8NE18 718 aaKnown RBP6.91□□□□□ -1.3
PTCD3-208ENST00000469585 OR5M3Q8NGP4 307 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 CAGE1Q8TC20 777 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 KAT5Q92993 513 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 ATP6V0A1Q93050 837 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 CLIP3Q96DZ5 547 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 PGBD1Q96JS3 809 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 C8orf48Q96LL4 319 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 LRGUKQ96M69 825 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 FOXP1Q9H334 677 aaPredicted RBP6.91□□□□□ -1.3
PTCD3-208ENST00000469585 HIPK3Q9H422 1215 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 NCDNQ9UBB6 729 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 PCDHB1Q9Y5F3 818 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 UBIAD1Q9Y5Z9 338 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 NFASCO94856 1347 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 MCM3APO60318 1980 aa6.91□□□□□ -1.3
PTCD3-208ENST00000469585 A0A1W2PRX2 142 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 NPEPPSL1A6NEC2 478 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RRN3P2A6NIE6 340 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 DDX39AO00148 427 aaKnown RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 AP1G1O43747 822 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 SGTAO43765 313 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 NEMFO60524 1076 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 OFD1O75665 1012 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 AMY1AP04745 511 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 INHBBP09529 407 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ZNF286BP0CG31 522 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RPS19P39019 145 aaKnown RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 GZMKP49863 264 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 NPEPPSP55786 919 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 PER3P56645 1201 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 FPGSQ05932 587 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ARHGAP1Q07960 439 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ORC2Q13416 577 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 CALCRLQ16602 461 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 SLC35G1Q2M3R5 365 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 PRAMEF14Q5SWL7 426 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 PSRC1Q6PGN9 363 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ANKRD33Q7Z3H0 272 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 MIER3Q7Z3K6 550 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RHOT1Q8IXI2 618 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RDM1Q8NG50 284 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RASSF8Q8NHQ8 419 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 IL31RAQ8NI17 732 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 SLC35G2Q8TBE7 412 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 MVB12AQ96EY5 273 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 CYFIP2Q96F07 1278 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 TMX3Q96JJ7 454 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 FAM20AQ96MK3 541 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 SCLT1Q96NL6 688 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 RIT2Q99578 217 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 TCF25Q9BQ70 676 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 JPH2Q9BR39 696 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 MANSC1Q9H8J5 431 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 AGO4Q9HCK5 861 aaKnown RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ZNF302Q9NR11 478 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 NRBP2Q9NSY0 501 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ZMYND8Q9ULU4 1186 aaPredicted RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 KCNJ14Q9UNX9 436 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 PCDHA10Q9Y5I2 948 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 CFAP20Q9Y6A4 193 aaKnown RBP6.9□□□□□ -1.3
PTCD3-208ENST00000469585 ASTN1O14525 1302 aa6.9□□□□□ -1.3
PTCD3-208ENST00000469585 FRMPD3Q5JV73 1810 aa6.9□□□□□ -1.31
PTCD3-208ENST00000469585 A0A1W2PPC1 479 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 VPS37CA5D8V6 355 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-208ENST00000469585 MYADML2A6NDP7 307 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 H0YGN5 161 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 TBX3O15119 743 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 GPR42O15529 346 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 CHMP2AO43633 222 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 DTNBO60941 627 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 CAND2O75155 1236 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 STC2O76061 302 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 ARIH2O95376 493 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 BMP15O95972 392 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 LGALS2P05162 132 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 SYN1P17600 705 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 HOXA5P20719 270 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 GJB2P29033 226 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 CIITAP33076 1130 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 RFC2P35250 354 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 TRAPPC10P48553 1259 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 ACTR2P61160 394 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 PSMC6P62333 389 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 CDC42EP1Q00587 391 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 PPFIA1Q13136 1202 aa6.89□□□□□ -1.31
PTCD3-208ENST00000469585 TARDBPQ13148 414 aaKnown RBP eCLIP6.89□□□□□ -1.31
PTCD3-208ENST00000469585 MRPL49Q13405 166 aaKnown RBP6.89□□□□□ -1.31
PTCD3-208ENST00000469585 MINDY4Q4G0A6 757 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms