RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 ARHGEF4Q9NR80 690 aa7.89□□□□□ -1.15
COL6A3-208ENST00000468792 TRMT13Q9NUP7 481 aaKnown RBP7.89□□□□□ -1.15
COL6A3-208ENST00000468792 INTS9Q9NV88 658 aaKnown RBP7.89□□□□□ -1.15
COL6A3-208ENST00000468792 DTLQ9NZJ0 730 aa7.89□□□□□ -1.15
COL6A3-208ENST00000468792 PSMC3IPQ9P2W1 217 aaPredicted RBP7.89□□□□□ -1.15
COL6A3-208ENST00000468792 XPO7Q9UIA9 1087 aaKnown RBP7.89□□□□□ -1.15
COL6A3-208ENST00000468792 RABGEF1Q9UJ41 708 aa7.89□□□□□ -1.15
COL6A3-208ENST00000468792 FBXW11Q9UKB1 542 aa7.89□□□□□ -1.15
COL6A3-208ENST00000468792 SMG5Q9UPR3 1016 aaKnown RBP7.89□□□□□ -1.15
COL6A3-208ENST00000468792 TEX264Q9Y6I9 313 aa7.89□□□□□ -1.15
COL6A3-208ENST00000468792 CENPFP49454 3210 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 CASTOR2A6NHX0 329 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 YJEFN3A6XGL0 299 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 E7ENQ6 273 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 M0QYT0 321 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ARVCFO00192 962 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 CLDN5O00501 218 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 NRP1O14786 923 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PPP1R12AO14974 1030 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 DCLK1O15075 740 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 KCNN4O15554 427 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 MTSS1O43312 755 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 OPHN1O60890 802 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TMEM63AO94886 807 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PARNO95453 639 aaKnown RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ELNP15502 786 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TFE3P19532 575 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 MX2P20592 715 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RBL1P28749 1068 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 GPX6P59796 221 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 SARNPP82979 210 aaKnown RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 NRG1Q02297 640 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 DEUP1Q05D60 604 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 SMARCB1Q12824 385 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 SLC10A2Q12908 348 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 BFSP2Q13515 415 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PRKD1Q15139 912 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 NFE2Q16621 373 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 KCTD19Q17RG1 926 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PPP6R3Q5H9R7 873 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 BRMS1LQ5PSV4 323 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 FNBP1LQ5T0N5 605 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ACBD5Q5T8D3 534 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ANKRD22Q5VYY1 191 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ARMC3Q5W041 872 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 OVOS1Q6IE37 1185 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 C1orf228Q6PIY5 440 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 KCNT2Q6UVM3 1135 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 C6orf89Q6UWU4 347 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 VSTM1Q6UX27 236 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 NPNTQ6UXI9 565 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RGS9BPQ6ZS82 235 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 C3orf62Q6ZUJ4 267 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PRUNE1Q86TP1 453 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RTN4RL1Q86UN2 441 aaPredicted RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TRABD2AQ86V40 505 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ZC3H18Q86VM9 953 aaKnown RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PALM2Q8IXS6 379 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 VPS52Q8N1B4 723 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 CCDC185Q8N715 623 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 URGCPQ8TCY9 931 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RNF139Q8WU17 664 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TFB1MQ8WVM0 346 aaKnown RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 HTR3CQ8WXA8 447 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 MYLPFQ96A32 169 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ZBTB9Q96C00 473 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 CEP295NLQ96MC4 621 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 PWWP2AQ96N64 755 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 CYTH2Q99418 400 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 NAT9Q9BTE0 207 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 COLEC11Q9BWP8 271 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ZMYND15Q9H091 742 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RAB6BQ9NRW1 208 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 RNF19AQ9NV58 838 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ETNK2Q9NVF9 386 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 GPATCH2LQ9NWQ4 482 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 COMMD8Q9NX08 183 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TMEM161AQ9NX61 479 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 SAGE1Q9NXZ1 904 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 FNIP2Q9P278 1114 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 ZNF180Q9UJW8 692 aa7.88□□□□□ -1.15
COL6A3-208ENST00000468792 TDRD15B5MCY1 1934 aaKnown RBP7.88□□□□□ -1.15
COL6A3-208ENST00000468792 A0A0A0MRY4 1105 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 A0A1W2PQ45 241 aaPredicted RBP7.87□□□□□ -1.15
COL6A3-208ENST00000468792 A0A1W2PQY0 241 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 TCRBV7S3A2A0A539 114 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 TMEM120BA0PK00 339 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 FAM47DPA6NHR8 397 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 ERI2A8K979 691 aaKnown RBP7.87□□□□□ -1.15
COL6A3-208ENST00000468792 TNFRSF10BO14763 440 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 CAPN9O14815 690 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 AOC2O75106 756 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 STK10O94804 968 aaKnown RBP7.87□□□□□ -1.15
COL6A3-208ENST00000468792 POMCP01189 267 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 BRAFP15056 766 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 SELPP16109 830 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 GOT1P17174 413 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 DRD4P21917 467 aa7.87□□□□□ -1.15
COL6A3-208ENST00000468792 IGFBP6P24592 240 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms