RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GRM4Q14833 912 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 NAGPAQ9UK23 515 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PEX16Q9Y5Y5 336 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SPACA6W5XKT8 324 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 KCTD2Q14681 263 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SLC25A24Q6NUK1 477 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 IZUMO1Q8IYV9 350 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PLEKHF1Q96S99 279 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 MAP3K14Q99558 947 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 LRRC40Q9H9A6 602 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 CLN6Q9NWW5 311 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 RUVBL2Q9Y230 463 aaKnown RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 SIN3BO75182 1162 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 LDOC1O95751 146 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-206ENST00000409809 CLTBP09497 229 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 PHKG1Q16816 387 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 UNC5CLQ8IV45 518 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 ACMSDQ8TDX5 336 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 DSN1Q9H410 356 aa13.22□□□□□ -0.29
COL6A3-206ENST00000409809 THRBP10828 461 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 BTDP43251 543 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 GTF2H3Q13889 308 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 IL1RL2Q9HB29 575 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 DGKIO75912 1065 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 STOX1Q6ZVD7 989 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 DNAAF5Q86Y56 855 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 OR6B3Q8NGW1 331 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 REEP1Q9H902 201 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ABCB10Q9NRK6 738 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 CLDN25C9JDP6 229 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 TMCC2O75069 709 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 CDK20Q8IZL9 346 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF180Q9UJW8 692 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 FYNP06241 537 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ANPEPP15144 967 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 GUCA1AP43080 201 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ABATP80404 500 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 BNIPLQ7Z465 357 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ITFG1Q8TB96 612 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 CPNE1Q99829 537 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 CCNL1Q9UK58 526 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-206ENST00000409809 ORC5O43913 435 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 VPS26AO75436 327 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 RBP3P10745 1247 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 PEX3P56589 373 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 INTS11Q5TA45 600 aaKnown RBP13.21□□□□□ -0.29
COL6A3-206ENST00000409809 SLC39A10Q9ULF5 831 aa13.21□□□□□ -0.29
COL6A3-206ENST00000409809 SCARA5Q6ZMJ2 495 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 IRX2Q9BZI1 471 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-206ENST00000409809 CCSER2Q9H7U1 834 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 C17orf75Q9HAS0 396 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 MCUBQ9NWR8 336 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 CLIC5Q9NZA1 410 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 NCAM1P13591 858 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 CHI3L1P36222 383 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-206ENST00000409809 HECTD3Q5T447 861 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 GRTP1Q5TC63 336 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 SLC9A4Q6AI14 798 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 SLC44A2Q8IWA5 706 aaPredicted RBP13.21□□□□□ -0.3
COL6A3-206ENST00000409809 ELOVL6Q9H5J4 265 aa13.21□□□□□ -0.3
COL6A3-206ENST00000409809 SFI1A8K8P3 1242 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 INPP4BO15327 924 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 RALAP11233 206 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 PEPDP12955 493 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DRG2P55039 364 aaKnown RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 PTPN21Q16825 1174 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NIM1KQ8IY84 436 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NEDD4LQ96PU5 975 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 SHOX2O60902 331 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 BST2Q10589 180 aaKnown RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZBTB8BQ8NAP8 495 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 CITED4Q96RK1 184 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 PIGSQ96S52 555 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 CMTM6Q9NX76 183 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 GNPTGQ9UJJ9 305 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MAP3K4Q9Y6R4 1608 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NR5A2O00482 541 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MGRN1O60291 552 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 SNX3O60493 162 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DLG1Q12959 904 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 CHRNA2Q15822 529 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 OTOAQ7RTW8 1153 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 CKAP2Q8WWK9 683 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ATXN7L3BQ96GX2 97 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 SLC6A15Q9H2J7 730 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MED11Q9P086 117 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 TJP2Q9UDY2 1190 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF222Q9UK12 451 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MFHAS1Q9Y4C4 1052 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 NDUFB9Q9Y6M9 179 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 RPS6KL1Q9Y6S9 549 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF804BA4D1E1 1349 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 TPST1O60507 370 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 ZNF682O95780 498 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 DRAXINQ8NBI3 349 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MTG1Q9BT17 334 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MB21D2Q8IYB1 491 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-206ENST00000409809 EEF1AKMT1Q8WVE0 214 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 MCEEQ96PE7 176 aa13.2□□□□□ -0.3
COL6A3-206ENST00000409809 XKR8Q9H6D3 395 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms