RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CLLU1OSQ5K130 101 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 FAXCQ5TGI0 409 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 LRRTM3Q86VH5 581 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 EDEM1Q92611 657 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 SLC9A7Q96T83 725 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 PKMYT1Q99640 499 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 KCNK9Q9NPC2 374 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 DDIT4Q9NX09 232 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 ZMYND8Q9ULU4 1186 aaPredicted RBP21.44■■□□□ 1.02
USP39-203ENST00000409470 PCDHB8Q9UN66 801 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 CLUHO75153 1309 aa21.44■■□□□ 1.02
USP39-203ENST00000409470 KBTBD13C9JR72 458 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 DDHD2O94830 711 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 SSTR1P30872 391 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 ARHGEF6Q15052 776 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 HEATR6Q6AI08 1181 aaKnown RBP21.43■■□□□ 1.02
USP39-203ENST00000409470 C4orf22Q6V702 233 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 C3orf62Q6ZUJ4 267 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 TFB1MQ8WVM0 346 aaKnown RBP21.43■■□□□ 1.02
USP39-203ENST00000409470 RRN3Q9NYV6 651 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 EEF2KO00418 725 aaKnown RBP21.43■■□□□ 1.02
USP39-203ENST00000409470 CREB1P16220 341 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 ADRA1BP35368 520 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 MAP2K2P36507 400 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 AIF1P55008 147 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 LRRC8DQ7L1W4 858 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 TADA2BQ86TJ2 420 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 TDRPQ86YL5 185 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 SRRM1Q8IYB3 904 aaKnown RBP21.43■■□□□ 1.02
USP39-203ENST00000409470 ATXN2LQ8WWM7 1075 aaKnown RBP21.43■■□□□ 1.02
USP39-203ENST00000409470 IRGQQ8WZA9 623 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 EURLQ9NYK6 297 aa21.43■■□□□ 1.02
USP39-203ENST00000409470 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.43■■□□□ 1.02
USP39-203ENST00000409470 FRMPD3Q5JV73 1810 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 TMEM120BA0PK00 339 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 B4GALT3O60512 393 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 FKTNO75072 461 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 GCATO75600 419 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 BRAFP15056 766 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 ATP2A2P16615 1042 aaKnown RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 GCAP28676 217 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 OR1G1P47890 313 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 APLP1P51693 650 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 FAM189BP81408 668 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 BHLHA9Q7RTU4 235 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 SPATA2LQ8IUW3 424 aaPredicted RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 VPS52Q8N1B4 723 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 NTAN1Q96AB6 310 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 MRRFQ96E11 262 aaKnown RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 FAM193BQ96PV7 902 aaPredicted RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 WDR83Q9BRX9 315 aaKnown RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 FTHL17Q9BXU8 183 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 PPCSQ9HAB8 311 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 ETNK1Q9HBU6 452 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 WDR6Q9NNW5 1121 aaKnown RBP21.42■■□□□ 1.02
USP39-203ENST00000409470 CHMP2BQ9UQN3 213 aa21.42■■□□□ 1.02
USP39-203ENST00000409470 HACD1B0YJ81 288 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 RASA4BC9J798 803 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 RASA4O43374 803 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 MFSD11O43934 449 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 DGKIO75912 1065 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 F9P00740 461 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 APRTP07741 180 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 ARL13BQ3SXY8 428 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 PM20D1Q6GTS8 502 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 MGARPQ8TDB4 240 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 PGAP3Q96FM1 320 aaPredicted RBP21.41■■□□□ 1.02
USP39-203ENST00000409470 OLFM3Q96PB7 478 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 PRMT1Q99873 361 aaKnown RBP21.41■■□□□ 1.02
USP39-203ENST00000409470 KANSL3Q9P2N6 904 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 FBXW11Q9UKB1 542 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 PHF24Q9UPV7 400 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 SELPP16109 830 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 ELK3P41970 407 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 DSC1Q08554 894 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 NR1H3Q13133 447 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 BSPRYQ5W0U4 402 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 VSTM1Q6UX27 236 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 C4orf50Q6ZRC1 276 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 ARHGEF18Q6ZSZ5 1173 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 RFX8Q6ZV50 586 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 ZNF296Q8WUU4 475 aaPredicted RBP21.41■■□□□ 1.02
USP39-203ENST00000409470 HTR3CQ8WXA8 447 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 MAML1Q92585 1016 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 FRMD8Q9BZ67 464 aaPredicted RBP21.41■■□□□ 1.02
USP39-203ENST00000409470 TBC1D13Q9NVG8 400 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 SLC24A2Q9UI40 661 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 RABGEF1Q9UJ41 708 aa21.41■■□□□ 1.02
USP39-203ENST00000409470 C5orf60A6NFR6 353 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 TSHRP16473 764 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 GEMIN4P57678 1058 aaKnown RBP21.4■■□□□ 1.02
USP39-203ENST00000409470 COLGALT2Q8IYK4 626 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 ANKRD42Q8N9B4 389 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 FBF1Q8TES7 1133 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 DYDC1Q8WWB3 177 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 CHMP6Q96FZ7 201 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 LGMNQ99538 433 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 COLEC11Q9BWP8 271 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 PNPLA8Q9NP80 782 aa21.4■■□□□ 1.02
USP39-203ENST00000409470 PRG3Q9Y2Y8 225 aaPredicted RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms