RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CDH8P55286 799 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 TBL3Q12788 808 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 KRT81Q14533 505 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 KLHL38Q2WGJ6 581 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 ZNF568Q3ZCX4 644 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 B3GNT6Q6ZMB0 384 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 IGDCC3Q8IVU1 814 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 KCTD6Q8NC69 237 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 LMO3Q8TAP4 145 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 TMA16Q96EY4 203 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 IFT43Q96FT9 208 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 IWS1Q96ST2 819 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 GPR20Q99678 358 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 SYT11Q9BT88 431 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 SETD4Q9NVD3 440 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 MAP3K20Q9NYL2 800 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 ARHGAP26Q9UNA1 814 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 ACTL7BQ9Y614 415 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 CXCL11O14625 94 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 HNRNPCL1O60812 293 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 PRKCBP05771 671 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 RBP3P10745 1247 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 PSMA2P25787 234 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 BEX3Q00994 111 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 TDRD10Q5VZ19 366 aaKnown RBP13.38□□□□□ -0.27
PTPRN-202ENST00000409251 PPP4R1Q8TF05 950 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 VPS11Q9H270 941 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 S100A14Q9HCY8 104 aa13.38□□□□□ -0.27
PTPRN-202ENST00000409251 ATAD5Q96QE3 1844 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 A8MXQ7 604 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TPST1O60507 370 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CXCL8P10145 99 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ZNF157P51786 506 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ACTR3P61158 418 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 PPIL2Q13356 520 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 GSTA3Q16772 222 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 DNAL1Q4LDG9 190 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TMEM259Q4ZIN3 620 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 UNC45BQ8IWX7 931 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 KCNK13Q9HB14 408 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 NR2E3Q9Y5X4 410 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 KIAA1217Q5T5P2 1943 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TCRBV9S1A1TA0A576 114 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TMEM63AO94886 807 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CD48P09326 243 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 HPCAP84074 193 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CENPCQ03188 943 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TTLL4Q14679 1199 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ATG16L1Q676U5 607 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 SYDE1Q6ZW31 735 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ANKRD23Q86SG2 305 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 APLFQ8IW19 511 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 STRA6Q9BX79 667 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 TMCO1Q9UM00 188 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 MAFBQ9Y5Q3 323 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ANKRD12Q6UB98 2062 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 SOCS7O14512 581 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 KRT37O76014 449 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CDH15P55291 814 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 EIF3EP60228 445 aaKnown RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CCL14Q16627 93 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 HSP90AA5PQ58FG0 334 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 ZC3H3Q8IXZ2 948 aaKnown RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 DIS3LQ8TF46 1054 aaKnown RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 CATSPER2Q96P56 530 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 PTPN18Q99952 460 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 MRPL47Q9HD33 250 aaKnown RBP13.37□□□□□ -0.27
PTPRN-202ENST00000409251 BLOC1S6Q9UL45 172 aa13.37□□□□□ -0.27
PTPRN-202ENST00000409251 IQCA1LA6NCM1 817 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 LYPLA2O95372 231 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 HOXA7P31268 230 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 MYL6P60660 151 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 TRPC3Q13507 836 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 AMHR2Q16671 573 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 CELF3Q5SZQ8 465 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 FBXL19Q6PCT2 694 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 ACAD11Q709F0 780 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 C2orf69Q8N8R5 385 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 SPATA18Q8TC71 538 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 SHC3Q92529 594 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 SKA1Q96BD8 255 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 DGCR14Q96DF8 476 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 PAIP1Q9H074 479 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 TSPYL2Q9H2G4 693 aaPredicted RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 ZC3H7BQ9UGR2 993 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 ALDH1A3P47895 512 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 MAP7D1Q3KQU3 841 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 KLC3Q6P597 504 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 LAYNQ6UX15 382 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 SPOCD1Q6ZMY3 1216 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 UNC5BQ8IZJ1 945 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 BANPQ8N9N5 519 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 ZFP28Q8NHY6 868 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 PNPOQ9NVS9 261 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 IQCF3P0C7M6 154 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 RPL22P35268 128 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 DCTN2Q13561 401 aaKnown RBP13.36□□□□□ -0.27
PTPRN-202ENST00000409251 TLR1Q15399 786 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 CES3Q6UWW8 571 aa13.36□□□□□ -0.27
PTPRN-202ENST00000409251 NET1Q7Z628 596 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms