RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 MSH3P20585 1137 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TUFMP49411 452 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TOB1P50616 345 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CCT8P50990 548 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RAB14P61106 215 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RHOAP61586 193 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 BTKQ06187 659 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 NFYCQ13952 458 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SEC23AQ15436 765 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PABPC1LQ4VXU2 614 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SLC27A1Q6PCB7 646 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RXFP2Q8WXD0 754 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CAAP1Q9H8G2 361 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 MAN1C1Q9NR34 630 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 KCNQ5Q9NR82 932 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 SATB2Q9UPW6 733 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 VPS4BO75351 444 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 PTPN3P26045 913 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 NPY2RP49146 381 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 MTM1Q13496 603 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 TRMT5Q32P41 509 aaKnown RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 EPC2Q52LR7 807 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 BNC2Q6ZN30 1099 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 NT5DC3Q86UY8 548 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 FBXO16Q8IX29 292 aaPredicted RBP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 RBM22Q9NW64 420 aaKnown RBP eCLIP5.6□□□□□ -1.51
VPS13C-204ENST00000395898 CYP39A1Q9NYL5 469 aa5.6□□□□□ -1.51
VPS13C-204ENST00000395898 E2F8A0AVK6 867 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SKAP2O75563 359 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 AKAP3O75969 853 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KCNMA1Q12791 1236 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PLCL1Q15111 1095 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CCDC92Q53HC0 331 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 FKBP1CQ5VVH2 108 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CYB5D1Q6P9G0 228 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 ABRAQ8N0Z2 381 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 STK40Q8N2I9 435 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 ZNF606Q8WXB4 792 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 REPS1Q96D71 796 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 BBS2Q9BXC9 721 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MRPL9Q9BYD2 267 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 OSGEPQ9NPF4 335 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MAPRE3Q9UPY8 281 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MYH9P35579 1960 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 TECPR2O15040 1411 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PSMD12O00232 456 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CNOT3O75175 753 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 DGKIO75912 1065 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CPA3P15088 417 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 FASP25445 335 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 TALDO1P37837 337 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SKIV2L2P42285 1042 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PSMD7P51665 324 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CSE1LP55060 971 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PPIL2Q13356 520 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SEZ6Q53EL9 994 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PDPK2PQ6A1A2 396 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CYP4Z2PQ8N1L4 340 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 USP6NLQ92738 828 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MTERF3Q96E29 417 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PAFAH2Q99487 392 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 DMAP1Q9NPF5 467 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CORO7P57737 925 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 HERVK_113P62684 666 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 USP39Q53GS9 565 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 TRAF7Q6Q0C0 670 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MYCBPAPQ8TBZ2 947 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 BHMTQ93088 406 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 TMEM159Q96B96 161 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SEMA6BQ9H3T3 888 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SLC24A3Q9HC58 644 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 RPS6KB2Q9UBS0 482 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 FAM153AQ9UHL3 310 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 AP3M1Q9Y2T2 418 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PCDHA3Q9Y5H8 950 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 UMODL1Q5DID0 1318 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 ANKRD12Q6UB98 2062 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 MANSC4A6NHS7 340 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KRT6AP02538 564 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KRT6BP04259 564 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 HOXB8P17481 243 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SLC1A6P48664 564 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KRT6CP48668 564 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 SEC24CP53992 1094 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 EFEMP1Q12805 493 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CCDC81Q6ZN84 652 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 RBM43Q6ZSC3 357 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 ACSF2Q96CM8 615 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PPP1R10Q96QC0 940 aaKnown RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KLF6Q99612 283 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 NLNQ9BYT8 704 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PHACTR1Q9C0D0 580 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 NOD2Q9HC29 1040 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CHORDC1Q9UHD1 332 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 HAO1Q9UJM8 370 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 PNMA8BQ9ULN7 279 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-204ENST00000395898 KLHL20Q9Y2M5 609 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 CAPN6Q9Y6Q1 641 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 DUSP10Q9Y6W6 482 aa5.59□□□□□ -1.51
VPS13C-204ENST00000395898 FMN2Q9NZ56 1722 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms