RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 AQP5P55064 265 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 NCCRP1Q6ZVX7 275 aaPredicted RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 LRRC70Q7Z2Q7 622 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GPATCH1Q9BRR8 931 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 THAP1Q9NVV9 213 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 SLC24A2Q9UI40 661 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 NR5A2O00482 541 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GATBO75879 557 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 PEPDP12955 493 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 DARSP14868 501 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 GPATCH4Q5T3I0 446 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 TCF7L2Q9NQB0 619 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 KIF14Q15058 1648 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 UTYO14607 1347 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 NCKAP5LQ9HCH0 1330 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 RGS14O43566 566 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CD2BP2O95400 341 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 RLN1P04808 185 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 ATP1A3P13637 1013 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GNA15P30679 374 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CHKAP35790 457 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PITPNAQ00169 270 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 CRTC3Q6UUV7 619 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 ABI1Q8IZP0 508 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 WDR48Q8TAF3 677 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 HDAC2Q92769 488 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 CEP295NLQ96MC4 621 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PPP1R10Q96QC0 940 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 RAB6BQ9NRW1 208 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 RAB26Q9ULW5 256 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 H3BM21 787 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GRIK3Q13003 919 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GPR107Q5VW38 600 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 TPTE2Q6XPS3 522 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 COMMD2Q86X83 199 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 RTKN2Q8IZC4 609 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 THEM5Q8N1Q8 247 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 GALNT15Q8N3T1 639 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 ACMSDQ8TDX5 336 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 PTCD3Q96EY7 689 aaKnown RBP8.95□□□□□ -0.98
LIG3-202ENST00000378526 KLHL5Q96PQ7 755 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 SLC4A9Q96Q91 983 aa8.95□□□□□ -0.98
LIG3-202ENST00000378526 WRBO00258 174 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 SERPINA3P01011 423 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 AMPD2Q01433 879 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 KCNH2Q12809 1159 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZNF667Q5HYK9 610 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DENND1BQ6P3S1 775 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 SLC44A2Q8IWA5 706 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 SPERTQ8NA61 448 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DRAXINQ8NBI3 349 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 STOML3Q8TAV4 291 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ITFG1Q8TB96 612 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 FAM49BQ9NUQ9 324 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 TBCCD1Q9NVR7 557 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 MTMR10Q9NXD2 777 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 NXF1Q9UBU9 619 aaKnown RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 CCDC88CQ9P219 2028 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZSCAN5CA6NGD5 496 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 OR7A10O76100 309 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 NPTXRO95502 500 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 S100PP25815 95 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 TTLL9Q3SXZ7 439 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ATAD3CQ5T2N8 411 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CYP4V2Q6ZWL3 525 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 TUBA1CQ9BQE3 449 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZSCAN5AQ9BUG6 496 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 PDGFCQ9NRA1 345 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 RPS6KA6Q9UK32 745 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 PEX16Q9Y5Y5 336 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 MYH1P12882 1939 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 MYH4Q9Y623 1939 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DYRK3O43781 588 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 PLA2G4BP0C869 781 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 GRK4P32298 578 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 SNAP47Q5SQN1 464 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 PHACTR4Q8IZ21 702 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DNAJA4Q8WW22 397 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 PRCCQ92733 491 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 PHF23Q9BUL5 403 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 CCDC177Q9NQR7 707 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.94□□□□□ -0.98
LIG3-202ENST00000378526 ST3GAL5Q9UNP4 418 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 KLRF2D3W0D1 207 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 TCEA3O75764 348 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 IFNA6P05013 189 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 GARTP22102 1010 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 CDKL4Q5MAI5 379 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 LLGL2Q6P1M3 1020 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 NSMFQ6X4W1 530 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 THAP5Q7Z6K1 395 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 DHDDSQ86SQ9 333 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 OR14K1Q8NGZ2 314 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 KAT2AQ92830 837 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 RNF25Q96BH1 459 aaPredicted RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 FAM120BQ96EK7 910 aaKnown RBP8.94□□□□□ -0.98
LIG3-202ENST00000378526 MS4A14Q96JA4 679 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 ZNF577Q9BSK1 485 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 LRMDAQ9H2I8 198 aa8.94□□□□□ -0.98
LIG3-202ENST00000378526 EXD2Q9NVH0 621 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms