RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SIN3BO75182 1162 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 TGM2P21980 687 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 ICAM3P32942 547 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 GMPRP36959 345 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 COPAP53621 1224 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 AQP4P55087 323 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 CRADDP78560 199 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 ATF7IP2Q5U623 682 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 NIM1KQ8IY84 436 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 MCUQ8NE86 351 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 LRRC39Q96DD0 335 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 SNRNP25Q9BV90 132 aaKnown RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 STK32BQ9NY57 414 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 ATP5BP06576 529 aaKnown RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 SLC1A6P48664 564 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 CUL3Q13618 768 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 HNRNPDQ14103 355 aaKnown RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 CCDC14Q49A88 953 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 MAP1SQ66K74 1059 aaPredicted RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 MAP7D3Q8IWC1 876 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 NLRP4Q96MN2 994 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 PNPOQ9NVS9 261 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 PIH1D1Q9NWS0 290 aaKnown RBP16.92■□□□□ 0.3
SDC4-201ENST00000372733 PCDHA11Q9Y5I1 949 aa16.92■□□□□ 0.3
SDC4-201ENST00000372733 INO80B-WBP1J3KQ70 363 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 TPP1O14773 563 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 CCNT2O60583 730 aaKnown RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 PROCP04070 461 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ALDOAP04075 364 aaKnown RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 PROZP22891 400 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ARRB2P32121 409 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 TCF7P36402 384 aaPredicted RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 SERPINB9P50453 376 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 GBE1Q04446 702 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 NBPF12Q5TAG4 269 aaPredicted RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 VWA5B1Q5TIE3 1220 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 SLC9A4Q6AI14 798 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 AAGABQ6PD74 315 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ILDR2Q71H61 639 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 MARK2Q7KZI7 788 aaKnown RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 ADGRG6Q86SQ4 1221 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 SESTD1Q86VW0 696 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ST13P4Q8IZP2 240 aaPredicted RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 ZNF280CQ8ND82 737 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 CENPKQ9BS16 269 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 INO80BQ9C086 356 aaPredicted RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 CDT1Q9H211 546 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ADAMTS5Q9UNA0 930 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 APOBEC2Q9Y235 224 aaKnown RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 ANK1P16157 1881 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 OPHN1O60890 802 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 ZMPSTE24O75844 475 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 GRIA2P42262 883 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 PRKG1Q13976 671 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 RTKN2Q8IZC4 609 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 RPF1Q9H9Y2 349 aaKnown RBP16.91■□□□□ 0.3
SDC4-201ENST00000372733 PTPRHQ9HD43 1115 aa16.91■□□□□ 0.3
SDC4-201ENST00000372733 E2F8A0AVK6 867 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 WDR27A2RRH5 827 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 HMGB2P26583 209 aaKnown RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 DLG1Q12959 904 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 PDE1CQ14123 709 aaPredicted RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 PCLAFQ15004 111 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 PDK2Q15119 407 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 TCHHL1Q5QJ38 904 aaPredicted RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 IER5Q5VY09 327 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 RNF217Q8TC41 542 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 GDPD5Q8WTR4 605 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 TRAPPC12Q8WVT3 735 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 DMAP1Q9NPF5 467 aaPredicted RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 ZDHHC7Q9NXF8 308 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 BTBD7Q9P203 1132 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 CDH22Q9UJ99 828 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 SORCS3Q9UPU3 1222 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 SF3B1O75533 1304 aaKnown RBP eCLIP16.9■□□□□ 0.3
SDC4-201ENST00000372733 PLIN3O60664 434 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 FAM160B1Q5W0V3 765 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 JADE1Q6IE81 842 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 CASC4Q6P4E1 433 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 AEBP2Q6ZN18 517 aaPredicted RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 TIFABQ6ZNK6 161 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 TSHZ1Q6ZSZ6 1077 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 CDKL3Q8IVW4 592 aaPredicted RBP16.9■□□□□ 0.3
SDC4-201ENST00000372733 ARHGAP18Q8N392 663 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 SORT1Q99523 831 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 CCDC28BQ9BUN5 200 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 MAGEB5Q9BZ81 275 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 TSPAN16Q9UKR8 245 aa16.9■□□□□ 0.3
SDC4-201ENST00000372733 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.89■□□□□ 0.29
SDC4-201ENST00000372733 CYP2F1P24903 491 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 IDH3AP50213 366 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 SLC10A2Q12908 348 aaPredicted RBP16.89■□□□□ 0.29
SDC4-201ENST00000372733 TNFAIP1Q13829 316 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 TRIP10Q15642 601 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 EEPD1Q7L9B9 569 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 HPS6Q86YV9 775 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 C10orf107Q8IVU9 208 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.89■□□□□ 0.293e-9■■■□□ 16
SDC4-201ENST00000372733 XPNPEP3Q9NQH7 507 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms