RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 GCATO75600 419 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TTC4O95801 387 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 HOXB7P09629 217 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FDPSP14324 419 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ENPEPQ07075 957 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SULT1C3Q6IMI6 304 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DPP9Q86TI2 863 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 NGDNQ8NEJ9 315 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZFYVE19Q96K21 471 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FERD3LQ96RJ6 166 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZSCAN5AQ9BUG6 496 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TTYH3Q9C0H2 523 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZDHHC18Q9NUE0 388 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TOR4AQ9NXH8 423 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PCYOX1Q9UHG3 505 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TRPC5Q9UL62 973 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 UGT2A1Q9Y4X1 527 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MAST1Q9Y2H9 1570 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PHGDHO43175 533 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ATF2P15336 505 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SLCO1A2P46721 670 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF135P52742 658 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CD83Q01151 205 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DLG1Q12959 904 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LAPTM5Q13571 262 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 IDI1Q13907 227 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LMBRD2Q68DH5 695 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FAM117BQ6P1L5 589 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MPRIPQ6WCQ1 1025 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CHSY1Q86X52 802 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 GALNT13Q8IUC8 556 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARHGEF19Q8IW93 802 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CAMKK1Q8N5S9 505 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZDHHC12Q96GR4 267 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PELOQ9BRX2 385 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ISCA1Q9BUE6 129 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM31Q9BZY9 425 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DHX33Q9H6R0 707 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PLEKHA5Q9HAU0 1116 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TM9SF3Q9HD45 589 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 POLR3BQ9NW08 1133 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 NYAP2Q9P242 653 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PCDHA4Q9UN74 947 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KLHL20Q9Y2M5 609 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PRELID3BQ9Y3B1 194 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 A0A0U1RQJ8 604 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TUBAL3A6NHL2 446 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KIAA0391O15091 583 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SLC22A2O15244 555 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 HOXC11O43248 304 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DNAJA2O60884 412 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PRKAR1AP10644 381 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CSNK2BP67870 215 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ZNF200P98182 395 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TRAF2Q12933 501 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FAM205BPQ63HN1 556 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARL6IP4Q66PJ3 421 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ARSKQ6UWY0 536 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PLEKHM3Q6ZWE6 761 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MIB1Q86YT6 1006 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DPP10Q8N608 796 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LEMD2Q8NC56 503 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 C7orf43Q8WVR3 580 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TOP1MTQ969P6 601 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 EGLN2Q96KS0 407 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TCEANC2Q96MN5 208 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 DOK1Q99704 481 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TCEAL7Q9BRU2 100 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 USP44Q9H0E7 712 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CD320Q9NPF0 282 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CASS4Q9NQ75 786 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SLC38A7Q9NVC3 462 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.27□□□□□ -1.732e-6■■■■■ 27.4
NEDD4-201ENST00000338963 PPARGC1AQ9UBK2 798 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 HCN4Q9Y3Q4 1203 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PCP4L1A6NKN8 68 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 LRRC53A6NM62 1247 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SFI1A8K8P3 1242 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TFECO14948 347 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 MFN2O95140 757 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RALBP11234 206 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RAB3AP20336 220 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 POU1F1P28069 291 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CXCR5P32302 372 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 ADCY7P51828 1080 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 IFIT5Q13325 482 aaKnown RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CDK10Q15131 360 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TMED2Q15363 201 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CYP2A13Q16696 494 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PLEKHG6Q3KR16 790 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 TRIM60Q495X7 471 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 KIAA0408Q6ZU52 694 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 USP51Q70EK9 711 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 SPATC1Q76KD6 591 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 RETREG3Q86VR2 466 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC103Q8IW40 242 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 CCDC60Q8IWA6 550 aaPredicted RBP4.27□□□□□ -1.73
NEDD4-201ENST00000338963 GALNT12Q8IXK2 581 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 PARP8Q8N3A8 854 aa4.27□□□□□ -1.73
NEDD4-201ENST00000338963 FLAD1Q8NFF5 587 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms