RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 RBP3P10745 1247 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 GOT1P17174 413 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 DUSP4Q13115 394 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 CALCOCO2Q13137 446 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 MGAT5BQ3V5L5 792 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 TMC3Q7Z5M5 1100 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 ARHGAP18Q8N392 663 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 RNF139Q8WU17 664 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 YME1L1Q96TA2 773 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 ACBD3Q9H3P7 528 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 PRDM10Q9NQV6 1147 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 OSER1Q9NX31 292 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 SPG21Q9NZD8 308 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 SLC27A5Q9Y2P5 690 aa16.04■□□□□ 0.16
LIMS1-202ENST00000338045 A0A1W2PQH9 124 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 H3BRJ5 948 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 PPFIA2O75334 1257 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 SOAT2O75908 522 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 OR1D2P34982 312 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ADCY8P40145 1251 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 NR2C2P49116 596 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 RPL10AP62906 217 aaKnown RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 HTRA4P83105 476 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 CAV1Q03135 178 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ARL13BQ3SXY8 428 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 KIAA1841Q6NSI8 718 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 MSANTD2Q6P1R3 559 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 C1orf228Q6PIY5 440 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 DDX53Q86TM3 631 aaKnown RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 IQCKQ8N0W5 287 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 BBOF1Q8ND07 529 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 STKLD1Q8NE28 680 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 SEPT5Q99719 369 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 CLSTN3Q9BQT9 956 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 WDCPQ9H6R7 721 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 HSFX1Q9UBD0 423 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 MTRF1LQ9UGC7 380 aaKnown RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 SGK1O00141 431 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 GJB5O95377 273 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 FGBP02675 491 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 YWHAQP27348 245 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 STIP1P31948 543 aaKnown RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 GLUD2P49448 558 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ZNF135P52742 658 aaPredicted RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 GDF10P55107 478 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 DPYSQ14117 519 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 SPDYCQ5MJ68 293 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ALS2CLQ60I27 953 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 NCBP2-AS2Q69YL0 99 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 PRUNE1Q86TP1 453 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 KRT222Q8N1A0 295 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ARHGEF4Q9NR80 690 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ARHGEF38Q9NXL2 777 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 AFF4Q9UHB7 1163 aaKnown RBP16.03■□□□□ 0.16
LIMS1-202ENST00000338045 MYO16Q9Y6X6 1858 aa16.03■□□□□ 0.16
LIMS1-202ENST00000338045 ALPK3Q96L96 1907 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 ABLIM3O94929 683 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 LINC00271P0C7V0 271 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 ZSCAN5DPP0CG00 497 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 RPL17P18621 184 aaKnown RBP16.02■□□□□ 0.16
LIMS1-202ENST00000338045 AMPD1P23109 780 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 PPM1AP35813 382 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 HCAR3P49019 387 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 VPS41P49754 854 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 ITGA8P53708 1063 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 FPGSQ05932 587 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 XRCC4Q13426 336 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 BRMS1LQ5PSV4 323 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 TPGS2Q68CL5 300 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 UNC45BQ8IWX7 931 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 GPR65Q8IYL9 337 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 CASP10Q92851 521 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 BADQ92934 168 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 TTLL2Q9BWV7 592 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 TKTL2Q9H0I9 626 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 ADAM7Q9H2U9 754 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 CLIC5Q9NZA1 410 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 GMIPQ9P107 970 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 PRKAG2Q9UGJ0 569 aa16.02■□□□□ 0.16
LIMS1-202ENST00000338045 GREB1Q4ZG55 1949 aa16.02■□□□□ 0.15
LIMS1-202ENST00000338045 BCLAF3A2AJT9 711 aaKnown RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 AGPSO00116 658 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 DNALI1O14645 258 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 ETS1P14921 441 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 ATF6P18850 670 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 TUFMP49411 452 aaKnown RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 PSEN1P49768 467 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 GBE1Q04446 702 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 DHX9Q08211 1270 aaKnown RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 SLC10A2Q12908 348 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 UAP1Q16222 522 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 HIBCHQ6NVY1 386 aaPredicted RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 ZC3H18Q86VM9 953 aaKnown RBP16.01■□□□□ 0.15
LIMS1-202ENST00000338045 ZNF461Q8TAF7 563 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 GPR152Q8TDT2 470 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 RSAD2Q8WXG1 361 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 RTP4Q96DX8 246 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 OSBPL2Q9H1P3 480 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 C10orf88Q9H8K7 445 aa16.01■□□□□ 0.15
LIMS1-202ENST00000338045 USP29Q9HBJ7 922 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms