RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 CAMK2GQ13555 558 aaPredicted RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 TFDP3Q5H9I0 405 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 SUGP1Q8IWZ8 645 aaKnown RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 VIPAS39Q9H9C1 493 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 RSAD1Q9HA92 442 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 SH3D21A4FU49 640 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 TRIM3O75382 744 aaPredicted RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 LY6KQ17RY6 165 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 LEMD2Q8NC56 503 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 MTA3Q9BTC8 594 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 SEMA4BQ9NPR2 832 aaPredicted RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 BATF3Q9NR55 127 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 NRKQ7Z2Y5 1582 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 HNRNPRO43390 633 aaKnown RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 ZNF157P51786 506 aaPredicted RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 NDNQ99608 321 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 RBBP8Q99708 897 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 TSEN34Q9BSV6 310 aaKnown RBP12.96□□□□□ -0.33
USP38-201ENST00000307017 BTRCQ9Y297 605 aa12.96□□□□□ -0.33
USP38-201ENST00000307017 PHGDHO43175 533 aaKnown RBP12.96□□□□□ -0.34
USP38-201ENST00000307017 PCDH8O95206 1070 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 HNF4AP41235 474 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 FASTKQ14296 549 aaKnown RBP12.96□□□□□ -0.34
USP38-201ENST00000307017 TRMT11Q7Z4G4 463 aaKnown RBP12.96□□□□□ -0.34
USP38-201ENST00000307017 FRMD6Q96NE9 622 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 CNOT7Q9UIV1 285 aaKnown RBP12.96□□□□□ -0.34
USP38-201ENST00000307017 CYP11B1P15538 503 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 TNNI3P19429 210 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 IQCF2Q8IXL9 164 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 RSPH1Q8WYR4 309 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 FAM120BQ96EK7 910 aaKnown RBP12.96□□□□□ -0.34
USP38-201ENST00000307017 CIPCQ9C0C6 399 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 TNKS2Q9H2K2 1166 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 EFCAB1Q9HAE3 211 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 DCDC2Q9UHG0 476 aa12.96□□□□□ -0.34
USP38-201ENST00000307017 MSH4O15457 936 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 PTK6Q13882 451 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 NFIXQ14938 502 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 COL23A1Q86Y22 540 aaPredicted RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 DDI1Q8WTU0 396 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 LRRC39Q96DD0 335 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 CYP39A1Q9NYL5 469 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 NDOR1Q9UHB4 597 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TMCC3Q9ULS5 477 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 NPC1L1Q9UHC9 1359 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TMEM2Q9UHN6 1383 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 PBRM1Q86U86 1689 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 CYB561D2O14569 222 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 NTRK1P04629 796 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 FAM58BPP0C7Q3 252 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 AMPD1P23109 780 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 MYL6P60660 151 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 PKN1Q16512 942 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TRAPPC12Q8WVT3 735 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP38-201ENST00000307017 PLA2G4CQ9UP65 541 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 FAM50BQ9Y247 325 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 C2orf81A6NN90 581 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 THRAP10827 490 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 CPA3P15088 417 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ZNF177Q13360 481 aaPredicted RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 TDRD10Q5VZ19 366 aaKnown RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 ZNF621Q6ZSS3 439 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 NYAP1Q6ZVC0 841 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 MARK2Q7KZI7 788 aaKnown RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 ARHGAP22Q7Z5H3 698 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ENKURQ8TC29 256 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 MIEF1Q9NQG6 463 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 HMGXB3Q12766 1538 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 FAM237BA0A1B0GVD1 139 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TMEM253P0C7T8 217 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ACADSP16219 412 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 HK2P52789 917 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 OXCT1P55809 520 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ITIH4Q14624 930 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 SV2CQ496J9 727 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 SLFN11Q7Z7L1 901 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TBC1D19Q8N5T2 526 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 DPP10Q8N608 796 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 PSMA8Q8TAA3 256 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 ATG4CQ96DT6 458 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 OMDQ99983 421 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 MECRQ9BV79 373 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TRMT13Q9NUP7 481 aaKnown RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 SNTG2Q9NY99 539 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 DGKBQ9Y6T7 804 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 SEC22BO75396 215 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 CYP2C9P11712 490 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 SNX32Q86XE0 403 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 TNIP2Q8NFZ5 429 aa12.95□□□□□ -0.34
USP38-201ENST00000307017 PABPC3Q9H361 631 aaKnown RBP12.95□□□□□ -0.34
USP38-201ENST00000307017 RIPK2O43353 540 aa12.94□□□□□ -0.34
USP38-201ENST00000307017 B3GAT3O94766 335 aa12.94□□□□□ -0.34
USP38-201ENST00000307017 CXCL8P10145 99 aa12.94□□□□□ -0.34
USP38-201ENST00000307017 PPIDQ08752 370 aaKnown RBP12.94□□□□□ -0.34
USP38-201ENST00000307017 HIST2H2ACQ16777 129 aaPredicted RBP12.94□□□□□ -0.34
USP38-201ENST00000307017 HIST2H2AA3Q6FI13 130 aa12.94□□□□□ -0.34
USP38-201ENST00000307017 R3HCC1LQ7Z5L2 792 aaKnown RBP12.94□□□□□ -0.34
USP38-201ENST00000307017 ALYREFQ86V81 257 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms