RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 PLD4Q96BZ4 506 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 ULBP1Q9BZM6 244 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 CIPCQ9C0C6 399 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 LRRC4Q9HBW1 653 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 CD248Q9HCU0 757 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 AGO1Q9UL18 857 aaKnown RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 STON1Q9Y6Q2 735 aa13.37□□□□□ -0.27
CD44-203ENST00000278386 TP53BP1Q12888 1972 aaPredicted RBP13.37□□□□□ -0.27
CD44-203ENST00000278386 NYNRINQ9P2P1 1898 aaKnown RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 XPO1O14980 1071 aaKnown RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 OPHN1O60890 802 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 IL12RB1P42701 662 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 ARID5AQ03989 594 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 PDE4CQ08493 712 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 ADIGQ0VDE8 80 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 BST2Q10589 180 aaKnown RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 LRMPQ12912 555 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 FUT11Q495W5 492 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 SYCP2LQ5T4T6 812 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 ZNF658Q5TYW1 1059 aaPredicted RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 UNQ6494/PRO21346Q6UXR6 183 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 FMNL3Q8IVF7 1028 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 SIX6OS1Q8N1H7 587 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 MINDY1Q8N5J2 469 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 DDI1Q8WTU0 396 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 P2RY11Q96G91 374 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 MRGPRX1Q96LB2 322 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 IPO9Q96P70 1041 aaKnown RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 FAM124BQ9H5Z6 455 aaPredicted RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 PRDM16Q9HAZ2 1276 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 OLA1Q9NTK5 396 aaKnown RBP13.36□□□□□ -0.27
CD44-203ENST00000278386 SLC27A6Q9Y2P4 619 aa13.36□□□□□ -0.27
CD44-203ENST00000278386 CACNA1EQ15878 2313 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 TRIM49BA6NDI0 452 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 PCNX2A6NKB5 2137 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 C1QTNF9BB2RNN3 333 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 TULP2O00295 520 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 NPC1O15118 1278 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 SYNCRIPO60506 623 aaKnown RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 SMC2O95347 1197 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 SYPP08247 313 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 C1QTNF9P0C862 333 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 CD6P30203 668 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 FKBP3Q00688 224 aaKnown RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 E2F5Q15329 346 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 PLEKHG6Q3KR16 790 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 CPXM2Q8N436 756 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 OR2I1PQ8NGU4 316 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 RNF139Q8WU17 664 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 NDRG1Q92597 394 aaKnown RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 ERCC4Q92889 916 aaPredicted RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 FOXJ1Q92949 421 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 SMARCE1Q969G3 411 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 ADAM33Q9BZ11 813 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 UBXN6Q9BZV1 441 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 CAPN10Q9HC96 672 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 THAP10Q9P2Z0 257 aaPredicted RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 SUSD2Q9UGT4 822 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 ARMCX3Q9UH62 379 aaPredicted RBP13.35□□□□□ -0.27
CD44-203ENST00000278386 FBXO10Q9UK96 956 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 ZFHX4Q86UP3 3567 aa13.35□□□□□ -0.27
CD44-203ENST00000278386 FRYQ5TBA9 3013 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 TMEM131Q92545 1883 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 SPAARA0A1B0GVQ0 90 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 ARHGAP33O14559 1287 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 TSPAN3O60637 253 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 TOP3BO95985 862 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 PROS1P07225 676 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 ACADMP11310 421 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 GNSP15586 552 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 TBXAS1P24557 533 aaPredicted RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 HARS2P49590 506 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 PMS1P54277 932 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 SIM1P81133 766 aaPredicted RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 STIM1Q13586 685 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 ZNF234Q14588 700 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 EIF4HQ15056 248 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 WDR45BQ5MNZ6 344 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 ANKRD40Q6AI12 368 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 SERPINA13PQ6UXR4 307 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 FMR1NBQ8N0W7 255 aaPredicted RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 UBA3Q8TBC4 463 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 EDEM1Q92611 657 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 SIPA1Q96FS4 1042 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 TOE1Q96GM8 510 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 GSDMAQ96QA5 445 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 SCNM1Q9BWG6 230 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 ELOVL2Q9NXB9 296 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 SFMBT1Q9UHJ3 866 aa13.34□□□□□ -0.27
CD44-203ENST00000278386 HOOK1Q9UJC3 728 aaKnown RBP13.34□□□□□ -0.27
CD44-203ENST00000278386 MSI1O43347 362 aaKnown RBP13.33□□□□□ -0.28
CD44-203ENST00000278386 EPHX1P07099 455 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 SETSIPP0DME0 302 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 VDRP11473 427 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 NCAM1P13591 858 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 LCP1P13796 627 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 PRKCHP24723 683 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 MCCD1P59942 119 aaPredicted RBP13.33□□□□□ -0.28
CD44-203ENST00000278386 LRRC63Q05C16 580 aa13.33□□□□□ -0.28
CD44-203ENST00000278386 SEMA3BQ13214 749 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms