RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 KCNT2Q6UVM3 1135 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 PGBD4Q96DM1 585 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 TSPAN18Q96SJ8 248 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 B3GNT5Q9BYG0 378 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 SMIM28A0A1B0GU29 152 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 PRPF4O43172 522 aaKnown RBP eCLIP16.82■□□□□ 0.28
CTCF-201ENST00000264010 AMPD1P23109 780 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 YWHAZP63104 245 aaKnown RBP16.82■□□□□ 0.28
CTCF-201ENST00000264010 SLC44A4Q53GD3 710 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 SLC45A4Q5BKX6 768 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 FNBP1LQ5T0N5 605 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 SH3PXD2AQ5TCZ1 1133 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 CRLF3Q8IUI8 442 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 TCP10LQ8TDR4 215 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 LRRC39Q96DD0 335 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 FAM111AQ96PZ2 611 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 ADAM7Q9H2U9 754 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 MORF4L1Q9UBU8 362 aa16.82■□□□□ 0.28
CTCF-201ENST00000264010 HAUS5O94927 633 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 IRX4P78413 519 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 SCARA3Q6AZY7 606 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 EPAS1Q99814 870 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 INPP5FQ9Y2H2 1132 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 SPECC1L-ADORA2AF8WAN1 911 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 ATP6V1G2O95670 118 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 ACAT1P24752 427 aaKnown RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 BEX3Q00994 111 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 SNX17Q15036 470 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 PDK4Q16654 411 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 KBTBD12Q3ZCT8 623 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 DENND5BQ6ZUT9 1274 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 THEM5Q8N1Q8 247 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 L3MBTL3Q96JM7 780 aaPredicted RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 CASQ2O14958 399 aaPredicted RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 SRGAP2BP0DMP2 458 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 NQO1P15559 274 aaKnown RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 CRYBB1P53674 252 aaPredicted RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 GRAMD1BQ3KR37 738 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 MDH1BQ5I0G3 518 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 ARHGAP17Q68EM7 881 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 NAT8LQ8N9F0 302 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 ZNF75CPQ92670 426 aaPredicted RBP16.81■□□□□ 0.28
CTCF-201ENST00000264010 SPATA17Q96L03 361 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 STARD13Q9Y3M8 1113 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 PCNTO95613 3336 aa16.81■□□□□ 0.28
CTCF-201ENST00000264010 A0A1W2PPM1 405 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 FBXO21O94952 628 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 PYGBP11216 843 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 FAAP100Q0VG06 881 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 CENPKQ9BS16 269 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 ZFYVE28Q9HCC9 887 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 UBAP1Q9NZ09 502 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 MDM4O15151 490 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 PAPSS1O43252 624 aaPredicted RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 THP07101 528 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 GSTA2P09210 222 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 TAC1P20366 129 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 LHX1P48742 406 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 ITPRIPL1Q6GPH6 555 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 SLC26A9Q7LBE3 791 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 PIGZQ86VD9 579 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 MTBPQ96DY7 904 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 NAF1Q96HR8 494 aaKnown RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 SLC4A5Q9BY07 1137 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 C15orf41Q9Y2V0 281 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 HACD1B0YJ81 288 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 DPYSL4O14531 572 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 TRDMT1O14717 391 aaKnown RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 PTPN9P43378 593 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 MAP3K7CLP57077 242 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 FSCN1Q16658 493 aaKnown RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 SPRYD7Q5W111 196 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 RWDD4Q6NW29 188 aaKnown RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 B3GALNT2Q8NCR0 500 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 HTR3CQ8WXA8 447 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 KRT82Q9NSB4 513 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 DDX43Q9NXZ2 648 aaKnown RBP16.8■□□□□ 0.28
CTCF-201ENST00000264010 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.8■□□□□ 0.28
CTCF-201ENST00000264010 KIAA1217Q5T5P2 1943 aa16.8■□□□□ 0.28
CTCF-201ENST00000264010 DNM1LO00429 736 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 KPNA6O60684 536 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 ESRRAP11474 423 aaPredicted RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 ADRA1DP25100 572 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 TKTL1P51854 596 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 GRB14Q14449 540 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 TMEM110Q86TL2 294 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 TTC30AQ86WT1 665 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 NDUFAF2Q8N183 169 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 EZH1Q92800 747 aaPredicted RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 TRIM62Q9BVG3 475 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 PRDM16Q9HAZ2 1276 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 RABGEF1Q9UJ41 708 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 PIAS1O75925 651 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 NCAM1P13591 858 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 PTPN1P18031 435 aaKnown RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 GJA5P36382 358 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 GSCP56915 257 aaPredicted RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 GABPB2Q8TAK5 448 aaPredicted RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 DNAJC9Q8WXX5 260 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 APBB2Q92870 758 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms