RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 A0A0U1RQF3 1178 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 KBTBD13C9JR72 458 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 SPAG7O75391 227 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 SKIP12755 728 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 CST5P28325 142 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 AIF1P55008 147 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 DAOAP59103 153 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 YWHAGP61981 247 aaKnown RBP eCLIP13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 NME3Q13232 169 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 TIGD5Q53EQ6 642 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 FAXCQ5TGI0 409 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 OTUD1Q5VV17 481 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 SYPL2Q5VXT5 272 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 NUGGCQ68CJ6 796 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 MCUQ8NE86 351 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 RNF139Q8WU17 664 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 FERMT1Q9BQL6 677 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 SSU72Q9NP77 194 aaKnown RBP13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 ARHGEF4Q9NR80 690 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 NOD1Q9Y239 953 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 IKBKGQ9Y6K9 419 aa13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 ZNF638Q14966 1978 aaKnown RBP13.39□□□□□ -0.27
SPTLC1-201ENST00000262554 NRP1O14786 923 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 MGEA5O60502 916 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 AVILO75366 819 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 DGKIO75912 1065 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 POMCP01189 267 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PAX3P23760 479 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 LIG3P49916 1009 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PITX1P78337 314 aaPredicted RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PTK7Q13308 1070 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 DSC3Q14574 896 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 LPIN1Q14693 890 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 RAB41Q5JT25 222 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 CCSAPQ6IQ19 270 aaPredicted RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 HFE2Q6ZVN8 426 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 IGDCC3Q8IVU1 814 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 C4orf33Q8N1A6 199 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 SLC7A14Q8TBB6 771 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 LRRN4Q8WUT4 740 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 DCAKDQ8WVC6 231 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 LRRC39Q96DD0 335 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 HHIPL1Q96JK4 782 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 OLFM3Q96PB7 478 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 KCNK16Q96T55 309 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 SLC9A7Q96T83 725 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 ADAM2Q99965 735 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PAIP2Q9BPZ3 127 aaKnown RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PAAF1Q9BRP4 392 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 KIF9Q9HAQ2 790 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 FGFR1OP2Q9NVK5 253 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 DSEQ9UL01 958 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 A0A1W2PPM1 405 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 TCRBV9S1A1TA0A576 114 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 C19orf67A6NJJ6 358 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 C9IYK1 514 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 B3GAT3O94766 335 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 STK10O94804 968 aaKnown RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 TPSB2P20231 275 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 IBSPP21815 317 aaPredicted RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 CA4P22748 312 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 GRIK3Q13003 919 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 SPARCL1Q14515 664 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 TPSAB1Q15661 275 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 ZMIZ2Q8NF64 920 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 HTR3CQ8WXA8 447 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 CFAP36Q96G28 342 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 OSBPL7Q9BZF2 842 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 ACTR5Q9H9F9 607 aaPredicted RBP13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PNPLA8Q9NP80 782 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 PIGVQ9NUD9 493 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 RRN3Q9NYV6 651 aa13.38□□□□□ -0.27
SPTLC1-201ENST00000262554 SF3B1O75533 1304 aaKnown RBP eCLIP13.37□□□□□ -0.275e-7■■■■■ 93.5
SPTLC1-201ENST00000262554 IQANK1A0A1B0GTG1 560 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 YJEFN3A6XGL0 299 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 E7ENQ6 273 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 EEF2KO00418 725 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 CREB3O43889 395 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 MFSD11O43934 449 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 SNX3O60493 162 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 METTL18O95568 372 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 ASMTLO95671 621 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 LTFP02788 710 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 FYNP06241 537 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 GSTA2P09210 222 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 USP17L7P0C7H9 530 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 KRT4P19013 534 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 WDR4P57081 412 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 SARNPP82979 210 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 TUSC3Q13454 348 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 ITGA7Q13683 1181 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 FAM26DQ5JW98 314 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 GPRIN1Q7Z2K8 1008 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 CAND1Q86VP6 1230 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 MICALL1Q8N3F8 863 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 CCDC33Q8N5R6 958 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 DENND1AQ8TEH3 1009 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 NTAN1Q96AB6 310 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 UROC1Q96N76 676 aa13.37□□□□□ -0.27
SPTLC1-201ENST00000262554 ACBD6Q9BR61 282 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms