RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 RNF8O76064 485 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 LAMP2P13473 410 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 NNTQ13423 1086 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 ZC3H12AQ5D1E8 599 aaKnown RBP28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 SCYL2Q6P3W7 929 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 SND1Q7KZF4 910 aaKnown RBP eCLIP28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 ARFGAP1Q8N6T3 406 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 SH3RF2Q8TEC5 729 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 CFAP97Q9P2B7 532 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 THEGQ9P2T0 379 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 LCMT1Q9UIC8 334 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 HYOU1Q9Y4L1 999 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 CAPN6Q9Y6Q1 641 aa28.35■■■□□ 2.13
CHMP4B-201ENST00000217402 LEFTY2O00292 366 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 SCAMP3O14828 347 aaKnown RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 LRCH4O75427 683 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 ENDOD1O94919 500 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 F9P00740 461 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 VIPR2P41587 438 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 KPNA1P52294 538 aaPredicted RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 EIF4EBP2Q13542 120 aaPredicted RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 IFI16Q16666 785 aaKnown RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 DAAM2Q86T65 1068 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 ADAMTS19Q8TE59 1207 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 WBP2Q969T9 261 aa28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 FCRL2Q96LA5 508 aaPredicted RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 PHF7Q9BWX1 381 aaPredicted RBP28.34■■■□□ 2.13
CHMP4B-201ENST00000217402 STC2O76061 302 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 IL9P15248 144 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 SSR1P43307 286 aaKnown RBP28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 RNF10Q8N5U6 811 aaKnown RBP28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 TDRD5Q8NAT2 981 aaKnown RBP28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 KIAA1524Q8TCG1 905 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 ACSF2Q96CM8 615 aaPredicted RBP28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 SLC39A13Q96H72 371 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 RPGRIP1Q96KN7 1286 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 ZKSCAN5Q9Y2L8 839 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 ZFP37Q9Y6Q3 630 aaPredicted RBP28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 COL6A3P12111 3177 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 DOCK8Q8NF50 2099 aa28.33■■■□□ 2.13
CHMP4B-201ENST00000217402 GRID2IPA4D2P6 1211 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 MOCS2O96007 188 aaPredicted RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 IGLV3-27P01718 113 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 TCF4P15884 667 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 CXCR3P49682 368 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 PUS10Q3MIT2 529 aaKnown RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 C11orf63Q6NUN7 778 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 RIN3Q8TB24 985 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 PLD4Q96BZ4 506 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 RSPRY1Q96DX4 576 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 CALR3Q96L12 384 aaKnown RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 PCSK1NQ9UHG2 260 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 FAM50BQ9Y247 325 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 HELZP42694 1942 aaKnown RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 C2CD4DB7Z1M9 353 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 PALMO75781 387 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 FCARP24071 287 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 WEE1P30291 646 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 MIPP30301 263 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 CCR1P32246 355 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 MAN1A1P33908 653 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 RING1Q06587 406 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 ACAP1Q15027 740 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 CC2D1AQ6P1N0 951 aaPredicted RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 CELF5Q8N6W0 485 aaKnown RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 IRX2Q9BZI1 471 aaPredicted RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 WDCPQ9H6R7 721 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 EIF2AK3Q9NZJ5 1116 aaKnown RBP28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 SH3BP1Q9Y3L3 701 aa28.32■■■□□ 2.12
CHMP4B-201ENST00000217402 NUP210Q8TEM1 1887 aaPredicted RBP28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 APOEP02649 317 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 COMTP21964 271 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 CORO1AP31146 461 aaKnown RBP28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 DDX42Q86XP3 938 aaKnown RBP eCLIP28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 CCDC185Q8N715 623 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 TKTL2Q9H0I9 626 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 KIF9Q9HAQ2 790 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 TMPRSS4Q9NRS4 437 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 EPS15L1Q9UBC2 864 aa28.31■■■□□ 2.12
CHMP4B-201ENST00000217402 SPOPO43791 374 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 HARS2P49590 506 aaKnown RBP28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 USP4Q13107 963 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 NUGGCQ68CJ6 796 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 TANGO2Q6ICL3 276 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 LRRC57Q8N9N7 239 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 PEBP4Q96S96 227 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 KXD1Q9BQD3 176 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 TRPV4Q9HBA0 871 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 ZFP14Q9HCL3 533 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 ANLNQ9NQW6 1124 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 SLTMQ9NWH9 1034 aaKnown RBP eCLIP28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 LSM7Q9UK45 103 aaKnown RBP28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 NR2E1Q9Y466 385 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 ALG6Q9Y672 507 aa28.3■■■□□ 2.12
CHMP4B-201ENST00000217402 PRPSAP2O60256 369 aa28.29■■■□□ 2.12
CHMP4B-201ENST00000217402 KLKB1P03952 638 aa28.29■■■□□ 2.12
CHMP4B-201ENST00000217402 SLC2A3P11169 496 aa28.29■■■□□ 2.12
CHMP4B-201ENST00000217402 PCK1P35558 622 aa28.29■■■□□ 2.12
CHMP4B-201ENST00000217402 GJC1P36383 396 aa28.29■■■□□ 2.12
CHMP4B-201ENST00000217402 PPP2R5DQ14738 602 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms