RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NUSAP1Q9BXS6 441 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 UBXN6Q9BZV1 441 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 LRRC4Q9HBW1 653 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 METTL14Q9HCE5 456 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 TMEM9BQ9NQ34 198 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 OLA1Q9NTK5 396 aaKnown RBP10.28□□□□□ -0.76
VRK3-216ENST00000599342 MARCH2Q9P0N8 246 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 CALCOCO1Q9P1Z2 691 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 TSPAN16Q9UKR8 245 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 COQ4Q9Y3A0 265 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 CACNA1AO00555 2505 aa10.28□□□□□ -0.76
VRK3-216ENST00000599342 SLC12A8A0AV02 714 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 PATE3B3GLJ2 98 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 PRRT4C9JH25 899 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 TM4SF5O14894 197 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ZNF217O75362 1048 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 KCNK5O95279 499 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ZBED1O96006 694 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 PTGER3P43115 390 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 RPL6Q02878 288 aaKnown RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 PDE4CQ08493 712 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ADIGQ0VDE8 80 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 BST2Q10589 180 aaKnown RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 CETN1Q12798 172 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 LMAN2Q12907 356 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 LRMPQ12912 555 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 STARD3Q14849 445 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 MAP7D1Q3KQU3 841 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 CCDC40Q4G0X9 1142 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 TRIM61Q5EBN2 209 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 PSAPL1Q6NUJ1 521 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 SYT12Q8IV01 421 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 DENND1CQ8IV53 801 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 SIX6OS1Q8N1H7 587 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 FRMD1Q8N878 549 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ENGASEQ8NFI3 743 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 SPATA20Q8TB22 786 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 IPO4Q8TEX9 1081 aaKnown RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 RNF139Q8WU17 664 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 UCMAQ8WVF2 138 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 SLC35C1Q96A29 364 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 PLD4Q96BZ4 506 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 DHTKD1Q96HY7 919 aaPredicted RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 ACOX2Q99424 681 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 GABRG3Q99928 467 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ULBP1Q9BZM6 244 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 EVLQ9UI08 416 aaPredicted RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 MBD1Q9UIS9 605 aaPredicted RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 ANGPTL2Q9UKU9 493 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 MYOFQ9NZM1 2061 aa10.27□□□□□ -0.77
VRK3-216ENST00000599342 ATXN2Q99700 1313 aaKnown RBP10.27□□□□□ -0.77
VRK3-216ENST00000599342 A0A1W2PQF6 199 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 GFRA2O00451 464 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 NPC1O15118 1278 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 PENKP01210 267 aaPredicted RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 KLKB1P03952 638 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 CFIP05156 583 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 SETSIPP0DME0 302 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 VDRP11473 427 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 NDUFV2P19404 249 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 HOXD12P35452 270 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 FMO5P49326 533 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 HARS2P49590 506 aaKnown RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 NOVA1P51513 510 aaKnown RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 ATXN3P54252 364 aaPredicted RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 IRX4P78413 519 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 E2F5Q15329 346 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 N4BP2L1Q5TBK1 243 aaPredicted RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 FYB2Q5VWT5 728 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 ISM2Q6H9L7 571 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 KLHL10Q6JEL2 608 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 KIAA1211LQ6NV74 962 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 ANKS1BQ7Z6G8 1248 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 RABEPKQ7Z6M1 372 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 CPXM2Q8N436 756 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 DDI1Q8WTU0 396 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 ERLEC1Q96DZ1 483 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 CEP63Q96MT8 703 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 NT5C1BQ96P26 610 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 CACNA2D2Q9NY47 1150 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 AGO1Q9UL18 857 aaKnown RBP10.26□□□□□ -0.77
VRK3-216ENST00000599342 HCN2Q9UL51 889 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 KIAA1257Q9ULG3 409 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 CYP8B1Q9UNU6 501 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 SLC27A6Q9Y2P4 619 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 RAD54BQ9Y620 910 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 THADAQ6YHU6 1953 aa10.26□□□□□ -0.77
VRK3-216ENST00000599342 IGHV1OR15-9A0A0B4J2B8 117 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 BICDL2A1A5D9 508 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 TULP2O00295 520 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 NDUFS2O75306 463 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 PAEPP09466 180 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 CISD3P0C7P0 127 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 ITPKAP23677 461 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 PMLP29590 882 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 MAPK8P45983 427 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 MFAP3P55082 362 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 ARID5AQ03989 594 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 ZNF33AQ06730 810 aa10.25□□□□□ -0.77
VRK3-216ENST00000599342 EIF4HQ15056 248 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms