RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ETNK2Q9NVF9 386 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 AKT3Q9Y243 479 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 HNRNPCL1O60812 293 aaKnown RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 SUPT3HO75486 399 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 METTL18O95568 372 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 TFE3P19532 575 aaPredicted RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 SDC4P31431 198 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 MRPS5P82675 430 aaKnown RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 NOMO1Q15155 1222 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 EFCAB12Q6NXP0 572 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 TMPRSS6Q8IU80 811 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 SEPT1Q8WYJ6 367 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 PGBD4Q96DM1 585 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 MOCOSQ96EN8 888 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 HPDLQ96IR7 371 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 R3HDMLQ9H3Y0 253 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 IFT122Q9HBG6 1241 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 SLC7A8Q9UHI5 535 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 CPSF3Q9UKF6 684 aaKnown RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 ANGPTL2Q9UKU9 493 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 NFASCO94856 1347 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 WDR27A2RRH5 827 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 ITM2AO43736 263 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 GMPSP49915 693 aaPredicted RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 EFNA5P52803 228 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 FASTKD1Q53R41 847 aaKnown RBP15.79■□□□□ 0.12
UPF1-204ENST00000596842 MPZL3Q6UWV2 235 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 SULF1Q8IWU6 871 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 CEP70Q8NHQ1 597 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 RNF157Q96PX1 679 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 PANX3Q96QZ0 392 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 TTLL3Q9Y4R7 772 aa15.79■□□□□ 0.12
UPF1-204ENST00000596842 FARP2O94887 1054 aaPredicted RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 ANPEPP15144 967 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 LPCAT4Q643R3 524 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 MAP1SQ66K74 1059 aaPredicted RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 ZPBP2Q6X784 338 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 GADL1Q6ZQY3 521 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 SESTD1Q86VW0 696 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 RASSF3Q86WH2 238 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 WDR75Q8IWA0 830 aaKnown RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 NME8Q8N427 588 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 FAM149B1Q96BN6 582 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 MFHAS1Q9Y4C4 1052 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 E7ESA3 106 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 APOEP02649 317 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 STAG3L1P0CL83 205 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 LCP1P13796 627 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 ADORA2AP29274 412 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 MSX2P35548 267 aaPredicted RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 AP2B1P63010 937 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 GOLGA7BQ2TAP0 167 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 GRAMD1BQ3KR37 738 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 PPM1JQ5JR12 505 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 GLRA4Q5JXX5 417 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 TRNP1Q6NT89 227 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 NIPA2Q8N8Q9 360 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 STKLD1Q8NE28 680 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 CMASQ8NFW8 434 aaPredicted RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 XAB2Q9HCS7 855 aaKnown RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 KRT82Q9NSB4 513 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 ZNF358Q9NW07 568 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 SIX4Q9UIU6 781 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 SNX9Q9Y5X1 595 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 A6NJR5 290 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 GPR25O00155 361 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 PROCP04070 461 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 PDGFRBP09619 1106 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 ASPHQ12797 758 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 OLIG2Q13516 323 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 IRGCQ6NXR0 463 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 CNPY3Q9BT09 278 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 DHRS4Q9BTZ2 278 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 SNRNP25Q9BV90 132 aaKnown RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 CDT1Q9H211 546 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 STX18Q9P2W9 335 aaKnown RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 TAGLN3Q9UI15 199 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 PCDHGC3Q9UN70 934 aa15.78■□□□□ 0.12
UPF1-204ENST00000596842 APOBEC2Q9Y235 224 aaKnown RBP15.78■□□□□ 0.12
UPF1-204ENST00000596842 SPDYE16A6NNV3 312 aaPredicted RBP15.77■□□□□ 0.12
UPF1-204ENST00000596842 HCRTO43612 131 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 USP12O75317 370 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 RTN3O95197 1032 aaPredicted RBP15.77■□□□□ 0.12
UPF1-204ENST00000596842 VTNP04004 478 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 ADORA2BP29275 332 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 AP3M2P53677 418 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 TMEM62Q0P6H9 643 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 HIC1Q14526 733 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 KCNJ11Q14654 390 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 N4BP2L1Q5TBK1 243 aaPredicted RBP15.77■□□□□ 0.12
UPF1-204ENST00000596842 DCAF15Q66K64 600 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 CAND1Q86VP6 1230 aaKnown RBP15.77■□□□□ 0.12
UPF1-204ENST00000596842 SPATA33Q96N06 139 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 STK32BQ9NY57 414 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 MRPL42Q9Y6G3 142 aaKnown RBP15.77■□□□□ 0.12
UPF1-204ENST00000596842 LOXHD1Q8IVV2 1947 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 NEMP1O14524 444 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 MAP7D1Q3KQU3 841 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 TNS4Q8IZW8 715 aa15.77■□□□□ 0.12
UPF1-204ENST00000596842 PCDH19Q8TAB3 1148 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms