RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 ETS1P14921 441 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SELPP16109 830 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 GRK4P32298 578 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 HTR7P34969 479 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 ATP1A2P50993 1020 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SLC18A1P54219 525 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 CDK16Q00536 496 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 RNASELQ05823 741 aaKnown RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 DSC1Q08554 894 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SMARCB1Q12824 385 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 PDIA2Q13087 525 aaKnown RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 MMRN1Q13201 1228 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 PDK1Q15118 436 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 NFE2Q16621 373 aaPredicted RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 KLHL38Q2WGJ6 581 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SLC45A4Q5BKX6 768 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 PPP6R3Q5H9R7 873 aaPredicted RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 NOMO2Q5JPE7 1267 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 KIAA0319Q5VV43 1072 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 C1orf228Q6PIY5 440 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 TRAF7Q6Q0C0 670 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 ZC3H18Q86VM9 953 aaKnown RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 RNF169Q8NCN4 708 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 C3orf58Q8NDZ4 430 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 BCAS4Q8TDM0 211 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 MYLPFQ96A32 169 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 LRRC39Q96DD0 335 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 FUBP3Q96I24 572 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS25-203ENST00000589520 CSPG4P5Q96PW8 444 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SMOQ99835 787 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 ULBP1Q9BZM6 244 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 MTMR10Q9NXD2 777 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 SAE1Q9UBE0 346 aaPredicted RBP10.78□□□□□ -0.68
VPS25-203ENST00000589520 GGA2Q9UJY4 613 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 USP3Q9Y6I4 520 aa10.78□□□□□ -0.68
VPS25-203ENST00000589520 TRIP11Q15643 1979 aa10.77□□□□□ -0.68
VPS25-203ENST00000589520 GMNCA6NCL1 334 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 HHLA1C9JL84 531 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 DNM1LO00429 736 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 CLDN5O00501 218 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 EBAG9O00559 213 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 KCNN4O15554 427 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 MTSS1O43312 755 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 DGKIO75912 1065 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 BEST1O76090 585 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 OAZ2O95190 189 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 TPSB2P20231 275 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ADRA1BP35368 520 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 FDFT1P37268 417 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 CDK7P50613 346 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 GDF10P55107 478 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 YWHAHQ04917 246 aaPredicted RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 PAFAH1B3Q15102 231 aaKnown RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 TPSAB1Q15661 275 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 CA9Q16790 459 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 DNAJC21Q5F1R6 531 aaKnown RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 CD300LGQ6UXG3 332 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 MICALCLQ6ZW33 695 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 TADA2BQ86TJ2 420 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 SPATA2LQ8IUW3 424 aaPredicted RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 PALM2Q8IXS6 379 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ZBED8Q8IZ13 594 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ARHGAP18Q8N392 663 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 GLIS1Q8NBF1 620 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ZMIZ2Q8NF64 920 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 TFB1MQ8WVM0 346 aaKnown RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 SEPT8Q92599 483 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ARHGEF2Q92974 986 aaKnown RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 ZBTB9Q96C00 473 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 KCTD15Q96SI1 283 aaPredicted RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 PKMYT1Q99640 499 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 RTP3Q9BQQ7 232 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.77□□□□□ -0.69
VPS25-203ENST00000589520 CCDC134Q9H6E4 229 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 ABCC13Q9NSE7 274 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 COMMD8Q9NX08 183 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 XPO7Q9UIA9 1087 aaKnown RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 FBXW11Q9UKB1 542 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 INPP5FQ9Y2H2 1132 aa10.77□□□□□ -0.69
VPS25-203ENST00000589520 TIMM13Q9Y5L4 95 aaPredicted RBP10.77□□□□□ -0.69
VPS25-203ENST00000589520 EXOC1LA0A1B0GW35 172 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 ERICH4A6NGS2 130 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 EEF2KO00418 725 aaKnown RBP10.76□□□□□ -0.69
VPS25-203ENST00000589520 PITPNM1O00562 1244 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 NDUFAB1O14561 156 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 TRDMT1O14717 391 aaKnown RBP10.76□□□□□ -0.69
VPS25-203ENST00000589520 PPP1R12AO14974 1030 aaPredicted RBP10.76□□□□□ -0.69
VPS25-203ENST00000589520 FAM107AO95990 144 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 NCAM1P13591 858 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 MX2P20592 715 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 RBL1P28749 1068 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 BRCC3P46736 316 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 GLUD2P49448 558 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 CXCR3P49682 368 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 AFF1P51825 1210 aaKnown RBP10.76□□□□□ -0.69
VPS25-203ENST00000589520 BASP1P80723 227 aaKnown RBP10.76□□□□□ -0.69
VPS25-203ENST00000589520 CAP1Q01518 475 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 GUCY1A3Q02108 690 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 ZNF33AQ06730 810 aa10.76□□□□□ -0.69
VPS25-203ENST00000589520 ELAVL2Q12926 359 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms