RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PROSER1Q86XN7 944 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 C2CD5Q86YS7 1000 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 OR2C3Q8N628 320 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ANKRD53Q8N9V6 530 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 NAXEQ8NCW5 288 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 NSUN6Q8TEA1 469 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ASB15Q8WXK1 588 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 PRPF18Q99633 342 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SEMA4CQ9C0C4 833 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.13□□□□□ -2.071e-6■■□□□ 13.8
SMCHD1-211ENST00000584897 MEGF9Q9H1U4 602 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 UNC45AQ9H3U1 944 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RNPEPQ9H4A4 650 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SH2D4AQ9H788 454 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 RBM12Q9NTZ6 932 aaKnown RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 IFT80Q9P2H3 777 aaPredicted RBP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SCOCQ9UIL1 159 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC39A10Q9ULF5 831 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 FPGT-TNNI3KV9GXZ4 949 aa2.13□□□□□ -2.07
SMCHD1-211ENST00000584897 ZMYM6O95789 1325 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 TTC41PQ6P2S7 1318 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 RAD50Q92878 1312 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KIAA0391O15091 583 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC16A6O15403 523 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PIP5K1CO60331 668 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KRT38O76015 456 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ZFPL1O95159 310 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ALDH2P05091 517 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 HARSP12081 509 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CHRNA5P30532 468 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 AARSP49588 968 aaKnown RBP eCLIP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MRPL12P52815 198 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 RNASELQ05823 741 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC10A2Q12908 348 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MRPL49Q13405 166 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SEMA5AQ13591 1074 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 RAB39AQ14964 217 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CCDC6Q16204 474 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SUPT20HL1Q3ZLR7 823 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 BTNL9Q6UXG8 535 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CHST15Q7LFX5 561 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 OVCH2Q7RTZ1 564 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CLEC14AQ86T13 490 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 TMTC2Q8N394 836 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PRR18Q8N4B5 295 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 C1orf131Q8NDD1 294 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 RSPH1Q8WYR4 309 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 TFAP2CQ92754 450 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KIAA1191Q96A73 305 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CNPPD1Q9BV87 410 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SSBP3Q9BWW4 388 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 LRRCC1Q9C099 1032 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MTG2Q9H4K7 406 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 LDAHQ9H6V9 325 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 TLK1Q9UKI8 766 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PRRT4C9JH25 899 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 GCOM1H8Y6P7 765 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 GRM8O00222 908 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 TLR5O60602 858 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PROP1O75360 226 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ALDH1A2O94788 518 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 POMCP01189 267 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SLC3A2P08195 630 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SRGNP10124 158 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MAP2K6P52564 334 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 NANOS3P60323 173 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 IL13RA1P78552 427 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MRPS35P82673 323 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KRT17Q04695 432 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ITPK1Q13572 414 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 GCKRQ14397 625 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 NOLC1Q14978 699 aaKnown RBP eCLIP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 RNF151Q2KHN1 245 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KHDC1Q4VXA5 237 aaKnown RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PLAC9Q5JTB6 97 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 KLHDC7AQ5VTJ3 777 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 LMBRD2Q68DH5 695 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 DRICH1Q6PGQ1 229 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CASC1Q6TDU7 716 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CPLX4Q7Z7G2 160 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 NOSTRINQ8IVI9 506 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 YAF2Q8IY57 180 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 PQLC1Q8N2U9 271 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ZNF480Q8WV37 535 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 CDX2Q99626 313 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 MAGEB5Q9BZ81 275 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 HAPLN2Q9GZV7 340 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 DMRT3Q9NQL9 472 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SORCS3Q9UPU3 1222 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 NIP7Q9Y221 180 aaKnown RBP eCLIP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ITIH6Q6UXX5 1313 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 AP3D1O14617 1153 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 ZBED4O75132 1171 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 NTSR2O95665 410 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 BAG3O95817 575 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 AMY2AP04746 511 aa2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 UBTFL1P0CB47 393 aaPredicted RBP2.12□□□□□ -2.07
SMCHD1-211ENST00000584897 SRGAP2BP0DMP2 458 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms