RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 MYOM3Q5VTT5 1437 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 A6NNZ2 444 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 INPPL1O15357 1258 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 PRPF3O43395 683 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TULP3O75386 442 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 HSPA5P11021 654 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TPH1P17752 444 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TNFRSF1BP20333 461 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 YY1P25490 414 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 CPA2P48052 419 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TXNL4AP83876 142 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 STIM1Q13586 685 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 CNGA2Q16280 664 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 CLEC9AQ6UXN8 241 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 ZNF793Q6ZN11 406 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 RAVER1Q8IY67 606 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 NGDNQ8NEJ9 315 aaKnown RBP4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 HIST1H2AAQ96QV6 131 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TRMOQ9BU70 441 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TM2D2Q9BX73 214 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 MLXIPLQ9NP71 852 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 STEAP1Q9UHE8 339 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 TPCN1Q9ULQ1 816 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 L1RE1Q9UN81 338 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 SLC27A6Q9Y2P4 619 aa4.84□□□□□ -1.63
SMCHD1-208ENST00000583344 CTTNBP2Q8WZ74 1663 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 SAMD9Q5K651 1589 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 FANCD2Q9BXW9 1451 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 MIA2Q96PC5 1412 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 MTUS2Q5JR59 1369 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 RNF123Q5XPI4 1314 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 ISM1B1AKI9 464 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 RRHO14718 337 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 TXNP10599 105 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 CD19P15391 556 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 EPHB1P54762 984 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 EIF4A1P60842 406 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 HSF1Q00613 529 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 FMO1Q01740 532 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 SEMA3AQ14563 771 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 ST3GAL2Q16842 350 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 PFKFB3Q16875 520 aaPredicted RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 ZNF549Q6P9A3 640 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 PELI3Q8N2H9 469 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 PRR11Q96HE9 360 aaPredicted RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 LYZL4Q96KX0 146 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 CHST8Q9H2A9 424 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 PRKRIP1Q9H875 184 aaPredicted RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 METTL14Q9HCE5 456 aaKnown RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 DKK4Q9UBT3 224 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 VPS51Q9UID3 782 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 ITGB1BP2Q9UKP3 347 aa4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 SIRT4Q9Y6E7 314 aaPredicted RBP4.83□□□□□ -1.64
SMCHD1-208ENST00000583344 TOPBP1Q92547 1522 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 DENND4BO75064 1496 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 POLA1P09884 1462 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 NCOA1Q15788 1441 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 CNTLNQ9NXG0 1405 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 ZBED9Q6R2W3 1325 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM90A8PA6NJQ4 464 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 AQP7P3A6NL99 342 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 C2CD4BA6NLJ0 364 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 SMAD6O43541 496 aaKnown RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 FRS3O43559 492 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM90A13PP0C7W8 464 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM90A24PP0C7X0 464 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 GRHL2Q6ISB3 625 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 TFAP2DQ7Z6R9 452 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 SESTD1Q86VW0 696 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 FAM71DQ8N9W8 422 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 SMCR8Q8TEV9 937 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 TRMT61AQ96FX7 289 aaKnown RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 VPS50Q96JG6 964 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 ZNF668Q96K58 619 aaPredicted RBP4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 NUAK2Q9H093 628 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 AS3MTQ9HBK9 375 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 VPS45Q9NRW7 570 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 ARL8BQ9NVJ2 186 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 WWOXQ9NZC7 414 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 DNAJB11Q9UBS4 358 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 UGGT2Q9NYU1 1516 aa4.82□□□□□ -1.64
SMCHD1-208ENST00000583344 RAD54L2Q9Y4B4 1467 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 SPATA31E1Q6ZUB1 1445 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 ROCK1Q13464 1354 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 SUPT6HQ7KZ85 1726 aaKnown RBP4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 PRR23D1E9PI22 279 aaPredicted RBP4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 SNX2O60749 519 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 PLAUP00749 431 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 MBPP02686 304 aaPredicted RBP4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 PRR23D2P0DMB1 279 aaPredicted RBP4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 RBL1P28749 1068 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 GALNSP34059 522 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 HTR7P34969 479 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 COPAP53621 1224 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 CCDC15Q0P6D6 951 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 ERV3-1Q14264 604 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 PLAG1Q6DJT9 500 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 UNC13DQ70J99 1090 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 UBE2Q1Q7Z7E8 422 aa4.81□□□□□ -1.64
SMCHD1-208ENST00000583344 P3H2Q8IVL5 708 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms