RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ATP11AP98196 1134 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 DEUP1Q05D60 604 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 ADCY1Q08828 1119 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SCAPQ12770 1279 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 PTK6Q13882 451 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SIX1Q15475 284 aaPredicted RBP8.29□□□□□ -1.08
VPS39-213ENST00000570062 SLC39A12Q504Y0 691 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 DCAF6Q58WW2 860 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 BRMS1LQ5PSV4 323 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 LCE2CQ5TA81 110 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 KIAA0319Q5VV43 1072 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 BTBD8Q5XKL5 378 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 LLGL2Q6P1M3 1020 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 MFSD7Q6UXD7 560 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 DEFB128Q7Z7B8 93 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 RFX6Q8HWS3 928 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 ZNF276Q8N554 614 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 PDZD8Q8NEN9 1154 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 PHOSPHO2Q8TCD6 241 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 AENQ8WTP8 325 aaKnown RBP8.29□□□□□ -1.08
VPS39-213ENST00000570062 RNF139Q8WU17 664 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 OVCA2Q8WZ82 227 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 RAPGEF5Q92565 580 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 TMEM169Q96HH4 297 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 CFAP57Q96MR6 1250 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 RNF157Q96PX1 679 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 RUFY1Q96T51 708 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 CALN1Q9BXU9 219 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 FRMD8Q9BZ67 464 aaPredicted RBP8.29□□□□□ -1.08
VPS39-213ENST00000570062 ULBP1Q9BZM6 244 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 RETREG1Q9H6L5 497 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 IL23AQ9NPF7 189 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS39-213ENST00000570062 PCSK1NQ9UHG2 260 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SLC12A6Q9UHW9 1150 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 SCML2Q9UQR0 700 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 ZNF148Q9UQR1 794 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 PRG3Q9Y2Y8 225 aaPredicted RBP8.29□□□□□ -1.08
VPS39-213ENST00000570062 PCDHB12Q9Y5F1 795 aa8.29□□□□□ -1.08
VPS39-213ENST00000570062 C3orf70A6NLC5 250 aaPredicted RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 HACD1B0YJ81 288 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 HHLA1C9JL84 531 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 M0QYT0 321 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 APOL1O14791 398 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 RRP9O43818 475 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 TBC1D4O60343 1298 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CST8O60676 142 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 GJB6O95452 261 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 C1RP00736 705 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FGBP02675 491 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 SOD2P04179 222 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 NCAM1P13591 858 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CPB1P15086 417 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 ATF2P15336 505 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 GJC1P36383 396 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 TNNT3P45378 269 aaPredicted RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 ARSEP51690 589 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 VCPP55072 806 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 EIF3BP55884 814 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 HDAC4P56524 1084 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 RBM10P98175 930 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 SLC7A5Q01650 507 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 BTG3Q14201 252 aaPredicted RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 CASP8Q14790 479 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CDO1Q16878 200 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 PAN2Q504Q3 1202 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 SPOUT1Q5T280 376 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 BSPRYQ5W0U4 402 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 SLC8B1Q6J4K2 584 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 PSRC1Q6PGN9 363 aaPredicted RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 RTL10Q7L3V2 364 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 BNIPLQ7Z465 357 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 ADAT2Q7Z6V5 191 aaKnown RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 CEP57Q86XR8 500 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 ARFGAP1Q8N6T3 406 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 ZMIZ2Q8NF64 920 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 OR10T2Q8NGX3 314 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 HASPINQ8TF76 798 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 HDAC7Q8WUI4 952 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 RSAD2Q8WXG1 361 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 PIK3R5Q8WYR1 880 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 HSPH1Q92598 858 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FAF2Q96CS3 445 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 ZNF689Q96CS4 500 aaPredicted RBP8.28□□□□□ -1.08
VPS39-213ENST00000570062 SNF8Q96H20 258 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 IGSF21Q96ID5 467 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CCDC114Q96M63 670 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FMO2Q99518 471 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 HEMGNQ9BXL5 484 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FUT8Q9BYC5 575 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 PHACTR1Q9C0D0 580 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 WDCPQ9H6R7 721 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CHST7Q9NS84 486 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 CLIC5Q9NZA1 410 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 SMARCAL1Q9NZC9 954 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 SPG21Q9NZD8 308 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 IL37Q9NZH6 218 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 FNIP2Q9P278 1114 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 TJP2Q9UDY2 1190 aa8.28□□□□□ -1.08
VPS39-213ENST00000570062 DNAJB4Q9UDY4 337 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms