RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 C1orf21Q9H246 121 aa6.44□□□□□ -1.38
CLK3-212ENST00000563418 ARHGAP20Q9P2F6 1191 aa6.44□□□□□ -1.38
CLK3-212ENST00000563418 GPN3Q9UHW5 284 aaPredicted RBP6.44□□□□□ -1.38
CLK3-212ENST00000563418 PNPLA6Q8IY17 1366 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FAM92AA1XBS5 289 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FOXN3O00409 490 aaPredicted RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 EML1O00423 815 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CD3EAPO15446 510 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 ITGB3P05106 788 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 DUPD1Q68J44 220 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 EIF3MQ7L2H7 374 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 ZSCAN29Q8IWY8 852 aaPredicted RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 CCNYL1Q8N7R7 359 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PNMA1Q8ND90 353 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 LILRB4Q8NHJ6 448 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FAM45AQ8TCE6 357 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TSPAN17Q96FV3 270 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 HEMGNQ9BXL5 484 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 DHX33Q9H6R0 707 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 ZNF696Q9H7X3 374 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CPNE5Q9HCH3 593 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TBX10O75333 385 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 COMTP21964 271 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PRKCQQ04759 706 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PROSER2Q86WR7 435 aaPredicted RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 PGBD4Q96DM1 585 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SLC25A23Q9BV35 468 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 EXOSC4Q9NPD3 245 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 SPAG4Q9NPE6 437 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TMEM221A6NGB7 291 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ANXA1P04083 346 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 P4HBP07237 508 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 NMT1P30419 496 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 PBX1P40424 430 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 HNF4AP41235 474 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 GPC3P51654 580 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 EFR3AQ14156 821 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TSNQ15631 228 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 FKBP9P1Q75LS8 142 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TTC7BQ86TV6 843 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 KIF18BQ86Y91 864 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 POU5F2Q8N7G0 328 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SUPT20HQ8NEM7 779 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 KATNAL1Q9BW62 490 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 UGT2B28Q9BY64 529 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ASNSD1Q9NWL6 643 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CDV3Q9UKY7 258 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 FIS1Q9Y3D6 152 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PPRC1Q5VV67 1664 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 H7C2Y5 167 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 EXTL3O43909 919 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 HOXC8P31273 242 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 MAPK12P53778 367 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TMBIM6P55061 237 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CDK18Q07002 472 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 KBTBD2Q8IY47 623 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FAM9CQ8IZT9 166 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FAM47BQ8NA70 645 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 WDR41Q9HAD4 459 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 INTS13Q9NVM9 706 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TMEM5Q9Y2B1 443 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CLUHO75153 1309 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 NRF1Q16656 503 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ZNF181Q2M3W8 571 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 DGKKQ5KSL6 1271 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CENPPQ6IPU0 288 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 HMBOX1Q6NT76 420 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SPARTQ8N0X7 666 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 FAM162AQ96A26 154 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PPP1R2P1Q96PQ5 205 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 AASDHPPTQ9NRN7 309 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 NKX1-2Q9UD57 310 aaPredicted RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 CDH22Q9UJ99 828 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 MAGI3Q5TCQ9 1506 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SH3D21A4FU49 640 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 UBE3AQ05086 875 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 OTOAQ7RTW8 1153 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 MYDGFQ969H8 173 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 ARMCX1Q9P291 453 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SLC9A2Q9UBY0 812 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.43□□□□□ -1.38
CLK3-212ENST00000563418 SALL1Q9NSC2 1324 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PLCH2O75038 1416 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 CAPN8A6NHC0 703 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 RBL1P28749 1068 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 GSTM4Q03013 218 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PRKAA1Q13131 559 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TCIRG1Q13488 830 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 OR8H1Q8NGG4 311 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SRPK1Q96SB4 655 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 ZFYVE28Q9HCC9 887 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 COMMD8Q9NX08 183 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 SRP68Q9UHB9 627 aaKnown RBP6.43□□□□□ -1.38
CLK3-212ENST00000563418 DNAJC16Q9Y2G8 782 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 MYH11P35749 1972 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 A0A087X0T9 212 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 PLK4O00444 970 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 MEIS1O00470 390 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 TRIM38O00635 465 aa6.43□□□□□ -1.38
CLK3-212ENST00000563418 NUP62P37198 522 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms