RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 MFSD5Q6N075 450 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 RFWD3Q6PCD5 774 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 SLC13A5Q86YT5 568 aaPredicted RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 RGL4Q8IZJ4 473 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 GPR62Q9BZJ7 368 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 OLA1Q9NTK5 396 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 NDRG2Q9UN36 371 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 G3BP2Q9UN86 482 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 EP300Q09472 2414 aaPredicted RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 RARAP10276 462 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 FLT3P36888 993 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 RAD23BP54727 409 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 LRRC26Q2I0M4 334 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 FNDC3BQ53EP0 1204 aaKnown RBP9.56□□□□□ -0.88
VPS39-205ENST00000562258 TFDP3Q5H9I0 405 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 MARC1Q5VT66 337 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 CRYGNQ8WXF5 182 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 DCUN1D1Q96GG9 259 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 TBCBQ99426 244 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 MLXIPLQ9NP71 852 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 GKN1Q9NS71 199 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 HACD3Q9P035 362 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 HCSTQ9UBK5 93 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 CHMP2BQ9UQN3 213 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 DERAQ9Y315 318 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 AKAP11Q9UKA4 1901 aa9.56□□□□□ -0.88
VPS39-205ENST00000562258 ZMYM2Q9UBW7 1377 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 FRMD3A2A2Y4 597 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 ZBTB22O15209 634 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 STX7O15400 261 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 USP12O75317 370 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 NOMO3P69849 1222 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 ZKSCAN8Q15776 578 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 TDRD5Q8NAT2 981 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 OR6K2Q8NGY2 324 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SUSD6Q92537 303 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 KRT35Q92764 455 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 EMID1Q96A84 441 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 ABHD8Q96I13 439 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TWNKQ96RR1 684 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TGS1Q96RS0 853 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 LATS2Q9NRM7 1088 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 DMAC2Q9NW81 257 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.55□□□□□ -0.88
VPS39-205ENST00000562258 ZFATQ9P243 1243 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 CARNS1A5YM72 827 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 NEDD8-MDP1E9PL57 170 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 RASGRF2O14827 1237 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TBL1XO60907 577 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TIMP1P01033 207 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 GJA8P48165 433 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 MRPS5P82675 430 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 BRD3Q15059 726 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 HIF1AQ16665 826 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 CCDC142Q17RM4 750 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TXNDC8Q6A555 127 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 VSTM1Q6UX27 236 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 KIAA1324Q6UXG2 1013 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 DNAJB7Q7Z6W7 309 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 LNX1Q8TBB1 728 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 SH3KBP1Q96B97 665 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 ACBD6Q9BR61 282 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 NSRP1Q9H0G5 558 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 SPTA1P02549 2419 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 CNOT1A5YKK6 2376 aaKnown RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 S100BP04271 92 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 CHKAP35790 457 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SOX4Q06945 474 aaPredicted RBP9.55□□□□□ -0.88
VPS39-205ENST00000562258 RAB30Q15771 203 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 ZRANB3Q5FWF4 1079 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 AADACL2Q6P093 401 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 TAS1R3Q7RTX0 852 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SLC4A11Q8NBS3 891 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SLC22A17Q8WUG5 538 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 BAP1Q92560 729 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 PBXIP1Q96AQ6 731 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SMC6Q96SB8 1091 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 SLC13A1Q9BZW2 595 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 MYH6P13533 1939 aa9.55□□□□□ -0.88
VPS39-205ENST00000562258 PITPNM1O00562 1244 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 SYN3O14994 580 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TBC1D4O60343 1298 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TPH1P17752 444 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 HOXA11P31270 313 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 EPHB4P54760 987 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 MMRN1Q13201 1228 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 COBLL1Q53SF7 1204 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 GRASPQ7Z6J2 395 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 SDCCAG8Q86SQ7 713 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 PLEKHO2Q8TD55 490 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 N4BP2L2Q92802 583 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 FCRL2Q96LA5 508 aaPredicted RBP9.54□□□□□ -0.88
VPS39-205ENST00000562258 PCDHB18PQ96TA0 734 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 NKX2-4Q9H2Z4 354 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 ADAMTS10Q9H324 1103 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 ERVK-5Q9HDB9 667 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 ABCB6Q9NP58 842 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 CNGB3Q9NQW8 809 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 TLR9Q9NR96 1032 aa9.54□□□□□ -0.88
VPS39-205ENST00000562258 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms