RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 SEMA6BQ9H3T3 888 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 SAR1AQ9NR31 198 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 INTS13Q9NVM9 706 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 RAB21Q9UL25 225 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 KLHL20Q9Y2M5 609 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 AP3M1Q9Y2T2 418 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 MAPTP10636 758 aaKnown RBP13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 CYP2B6P20813 491 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 CASP4P49662 377 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 CDH17Q12864 832 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 GRTP1Q5TC63 336 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 ABRAQ8N0Z2 381 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 B3GALNT2Q8NCR0 500 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 DPY30Q9C005 99 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 ARMC7Q9H6L4 198 aa13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 AVENQ9NQS1 362 aaPredicted RBP13.56□□□□□ -0.24
CSPG4P11-201ENST00000560634 H7C0S8 307 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 RIPK2O43353 540 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 UPP2O95045 317 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 GLI1P08151 1106 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CETPP11597 493 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 ALDH7A1P49419 539 aaKnown RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 DDR2Q16832 855 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SPDYCQ5MJ68 293 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 DHFR2Q86XF0 187 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 EID3Q8N140 333 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 WDR36Q8NI36 951 aaKnown RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 TMEM176AQ96HP8 235 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 GLT1D1Q96MS3 346 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 APOL4Q9BPW4 351 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 FICDQ9BVA6 458 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CLEC4MQ9H2X3 399 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SYNDIG1Q9H7V2 258 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 RPS6KB2Q9UBS0 482 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 DDX20Q9UHI6 824 aaKnown RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 VANGL2Q9ULK5 521 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SHROOM2Q13796 1616 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 LINC00854A0A1B0GVQ3 168 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 TMEM191CA6NGB0 347 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 FCHO1O14526 889 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 BAIAP3O94812 1187 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CPSF4O95639 269 aaKnown RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CLTBP09497 229 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 ME2P23368 584 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 PSMB9P28065 219 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CRABP2P29373 138 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 MAGEA10P43363 369 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 RFX5P48382 616 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SHROOM1Q2M3G4 852 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 PGS1Q32NB8 556 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 NUDT12Q9BQG2 462 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SERHL2Q9H4I8 314 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SCUBE2Q9NQ36 999 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SERHLQ9NQF3 203 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CNGB3Q9NQW8 809 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CISHQ9NSE2 258 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 UBA2Q9UBT2 640 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 NDUFAF1Q9Y375 327 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 PCDHB7Q9Y5E2 793 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 C17orf102A2RUQ5 167 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 DNALI1O14645 258 aaPredicted RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 HOXA2O43364 376 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SUPT20HL2P0C7V6 817 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CYP24A1Q07973 514 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 SKIV2LQ15477 1246 aaKnown RBP13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 PCNX4Q63HM2 1172 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 NEK10Q6ZWH5 1172 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 ILDR2Q71H61 639 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 COLGALT1Q8NBJ5 622 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 WDR48Q8TAF3 677 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 TAS1R2Q8TE23 839 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 RORBQ92753 470 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 PGM2Q96G03 612 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 ASB2Q96Q27 587 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 UGT2B28Q9BY64 529 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 OSGEPQ9NPF4 335 aa13.55□□□□□ -0.24
CSPG4P11-201ENST00000560634 CYB561D2O14569 222 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 VPS4BO75351 444 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 PABPC1P11940 636 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 NPY2RP49146 381 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 PPIDQ08752 370 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 ZCCHC8Q6NZY4 707 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 TMC5Q6UXY8 1006 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 TMEM26Q6ZUK4 368 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 ZNF438Q7Z4V0 828 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 TLK2Q86UE8 772 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 FAM131BQ86XD5 332 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 C4orf19Q8IY42 314 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 EIF1ADQ8N9N8 165 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 ROGDIQ9GZN7 287 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 TRPM5Q9NZQ8 1165 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 SMIM31A0A1B0GVY4 71 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 NCF1BA6NI72 391 aaPredicted RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 NCF1CA8MVU1 366 aaPredicted RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 PHGDHO43175 533 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 ATG7O95352 703 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 NCF1P14598 390 aaPredicted RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 BST2Q10589 180 aaKnown RBP13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 NAB1Q13506 487 aa13.54□□□□□ -0.24
CSPG4P11-201ENST00000560634 C11orf74Q86VG3 221 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms