RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GBP2P32456 591 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 BCAR1P56945 870 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 DAOAP59103 153 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 YWHAHQ04917 246 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 RNASELQ05823 741 aaKnown RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 TAF5Q15542 800 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 KRT71Q3SY84 523 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 C6orf118Q5T5N4 469 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 DCP1BQ8IZD4 617 aaKnown RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 SH2D3CQ8N5H7 860 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 MYLPFQ96A32 169 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 NTAN1Q96AB6 310 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 PGAP3Q96FM1 320 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 PGM2Q96G03 612 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 NPY6RQ99463 290 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 LPIN3Q9BQK8 851 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 CCDC77Q9BR77 488 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 OXCT2Q9BYC2 517 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 FRMD8Q9BZ67 464 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 PPCSQ9HAB8 311 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 PAK6Q9NQU5 681 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-229ENST00000557348 AP4E1Q9UPM8 1137 aa13.13□□□□□ -0.31
SHMT2-229ENST00000557348 MYBPHLA2RUH7 354 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CLDN5O00501 218 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ZBED1O96006 694 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ABHD2P08910 425 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 RBP3P10745 1247 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ALADP13716 330 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 AFF1P51825 1210 aaKnown RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CCNG1P51959 295 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 DYNLT1P63172 113 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ELAVL2Q12926 359 aaKnown RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 GPS1Q13098 491 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 MBTPS1Q14703 1052 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TRIP13Q15645 432 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 NFE2Q16621 373 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ARL13BQ3SXY8 428 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PLEKHG4Q58EX7 1191 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 DCAF6Q58WW2 860 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 SH3PXD2AQ5TCZ1 1133 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 KCTD16Q68DU8 428 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PPP1R21Q6ZMI0 780 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 BNIPLQ7Z465 357 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CPLX4Q7Z7G2 160 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CDKL3Q8IVW4 592 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PPIL6Q8IXY8 311 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 DEFB106AQ8N104 65 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TLCD1Q96CP7 247 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 FUBP3Q96I24 572 aaKnown RBP eCLIP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 SMOQ99835 787 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PCDHB7Q9Y5E2 793 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 FRMPD3Q5JV73 1810 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 BCLAF3A2AJT9 711 aaKnown RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 H3BRJ5 948 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 ATP6V1G2O95670 118 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TTC4O95801 387 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 IFNB1P01574 187 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 LTFP02788 710 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CD48P09326 243 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CCND1P24385 295 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CMPK2Q5EBM0 449 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 EFHC2Q5JST6 749 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 KIAA0319Q5VV43 1072 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CENPUQ71F23 418 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CCDC25Q86WR0 208 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CEP57Q86XR8 500 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 SPATA2LQ8IUW3 424 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 COLGALT2Q8IYK4 626 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TEX9Q8N6V9 391 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 CLEC4CQ8WTT0 213 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 RTP4Q96DX8 246 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PKMYT1Q99640 499 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TMEM121Q9BTD3 319 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 DHX35Q9H5Z1 703 aaKnown RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 NOP53Q9NZM5 478 aaKnown RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 PAK5Q9P286 719 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 OGDHLQ9ULD0 1010 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 SLC12A4Q9UP95 1085 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 TIMM13Q9Y5L4 95 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-229ENST00000557348 RAD54BQ9Y620 910 aa13.12□□□□□ -0.31
SHMT2-229ENST00000557348 HACD1B0YJ81 288 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 E7ENQ6 273 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 TP73O15350 636 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 TCEA3O75764 348 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 OAZ2O95190 189 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 CYP2F1P24903 491 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 L1CAMP32004 1257 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 BRCC3P46736 316 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 VPS41P49754 854 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SEC24CP53992 1094 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 ELF3P78545 371 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 DEUP1Q05D60 604 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SCAPQ12770 1279 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SMARCB1Q12824 385 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 SLC29A2Q14542 456 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 CLLU1OSQ5K130 101 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PM20D1Q6GTS8 502 aa13.11□□□□□ -0.31
SHMT2-229ENST00000557348 DARS2Q6PI48 645 aaKnown RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PDZD4Q76G19 769 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-229ENST00000557348 PIGWQ7Z7B1 504 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms