RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 GPR155Q7Z3F1 870 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 GATAD2AQ86YP4 633 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 IGSF8Q969P0 613 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 SMOQ99835 787 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 SEL1LQ9UBV2 794 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 FTSJ1Q9UET6 329 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 CLEC4EQ9ULY5 219 aa13.64□□□□□ -0.23
VPS29-211ENST00000553128 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.64□□□□□ -0.23
VPS29-211ENST00000553128 TEX51A0A1B0GUA7 166 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 CAPN9O14815 690 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 RRP8O43159 456 aaKnown RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 SYNCRIPO60506 623 aaKnown RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 ACADMP11310 421 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 LONP1P36776 959 aaKnown RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 CTSKP43235 329 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 ZNF234Q14588 700 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 FYB2Q5VWT5 728 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 GPRIN1Q7Z2K8 1008 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 WDR49Q8IV35 697 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 RBBP8NLQ8NC74 664 aaPredicted RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 BIRC7Q96CA5 298 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 ZSCAN31Q96LW9 406 aaPredicted RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 ORAI3Q9BRQ5 295 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 MED10Q9BTT4 135 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 SEMA4CQ9C0C4 833 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 SMYD3Q9H7B4 428 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 NMUR1Q9HB89 426 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 DMAP1Q9NPF5 467 aaPredicted RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 KRT82Q9NSB4 513 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 NXF1Q9UBU9 619 aaKnown RBP13.63□□□□□ -0.23
VPS29-211ENST00000553128 SLC27A6Q9Y2P4 619 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 PCDHB13Q9Y5F0 798 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 COL12A1Q99715 3063 aa13.63□□□□□ -0.23
VPS29-211ENST00000553128 ZNF233A6NK53 670 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 ENC1O14682 589 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 CYP26A1O43174 497 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 AP1G2O75843 785 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 PENKP01210 267 aaPredicted RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 KLKB1P03952 638 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 EPHX1P07099 455 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 DLATP10515 647 aaKnown RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 GAP43P17677 238 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 GRIA4P48058 902 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 MYL6P60660 151 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 TNNC1P63316 161 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 CXADRP78310 365 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 TLE3Q04726 772 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 CCDC173Q0VFZ6 552 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 ORC1Q13415 861 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 TMEM215Q68D42 235 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 FUKQ8N0W3 1084 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 RDH13Q8NBN7 331 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 SNIP1Q8TAD8 396 aaKnown RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 ZNF516Q92618 1163 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 PIWIL1Q96J94 861 aaKnown RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 GZF1Q9H116 711 aaPredicted RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 XYLT2Q9H1B5 865 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 OLFML3Q9NRN5 406 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 LSM7Q9UK45 103 aaKnown RBP13.62□□□□□ -0.23
VPS29-211ENST00000553128 KNTC1P50748 2209 aa13.62□□□□□ -0.23
VPS29-211ENST00000553128 BRINP1O60477 761 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 FAM163BP0C2L3 166 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 CCDC130P13994 396 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 IDEP14735 1019 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 HOXD13P35453 343 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 ATP5C1P36542 298 aaKnown RBP13.61□□□□□ -0.23
VPS29-211ENST00000553128 ZNF132P52740 706 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 RTP5Q14D33 572 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 SHBQ15464 509 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 TEAD4Q15561 434 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 HES3Q5TGS1 186 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 SPACA3Q8IXA5 215 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 ZNF366Q8N895 744 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 HPS3Q969F9 1004 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 SMARCD1Q96GM5 515 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 SDCBP2Q9H190 292 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 OSGEPQ9NPF4 335 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 CYLDQ9NQC7 956 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.61□□□□□ -0.23
VPS29-211ENST00000553128 ELOVL2Q9NXB9 296 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 HSPBP1Q9NZL4 362 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 PCDHGA1Q9Y5H4 931 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 CKAP5Q14008 2032 aa13.61□□□□□ -0.23
VPS29-211ENST00000553128 A0A1B0GTQ1 180 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 A0A1W2PQH9 124 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 FRMD3A2A2Y4 597 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 PAPSS1O43252 624 aaPredicted RBP13.6□□□□□ -0.23
VPS29-211ENST00000553128 TSPAN3O60637 253 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 RFPL3O75679 317 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 STC2O76061 302 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 FSBPO95073 299 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 KRT10P13645 584 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 TNNI1P19237 187 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 HNF1BP35680 557 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 ACADVLP49748 655 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 MAP3K7CLP57077 242 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 SURF1Q15526 300 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 SCARA5Q6ZMJ2 495 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 ACOT1Q86TX2 421 aa13.6□□□□□ -0.23
VPS29-211ENST00000553128 FMNL3Q8IVF7 1028 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms