RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 TMEM25Q86YD3 366 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 FMNL3Q8IVF7 1028 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 UNC45BQ8IWX7 931 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 ETFBKMTQ8IXQ9 262 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 CPXM2Q8N436 756 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 USP33Q8TEY7 942 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 FBRSL1Q9HCM7 1045 aaKnown RBP12.35□□□□□ -0.43
HDAC4-216ENST00000544989 ST7Q9NRC1 585 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 EBF1Q9UH73 591 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 DNAJC12Q9UKB3 198 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 GMEB2Q9UKD1 530 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 NUDT5Q9UKK9 219 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 MMP17Q9ULZ9 603 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 PCDHGC3Q9UN70 934 aa12.35□□□□□ -0.43
HDAC4-216ENST00000544989 YJEFN3A6XGL0 299 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 E7ENQ6 273 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 NEDD8-MDP1E9PL57 170 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 K7EQS6 105 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 SCAMP3O14828 347 aaKnown RBP12.34□□□□□ -0.43
HDAC4-216ENST00000544989 TULP3O75386 442 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 ALDH1A2O94788 518 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 TYRP14679 529 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 PTMSP20962 102 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 KRT9P35527 623 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 RGS7P49802 495 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 DGKEP52429 567 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 MYL5Q02045 173 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 NNTQ13423 1086 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 DMC1Q14565 340 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 TRIP4Q15650 581 aaPredicted RBP12.34□□□□□ -0.43
HDAC4-216ENST00000544989 EOGTQ5NDL2 527 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 FKBP15Q5T1M5 1219 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 CDKAL1Q5VV42 579 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 NUGGCQ68CJ6 796 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 LAIR1Q6GTX8 287 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 BHLHA9Q7RTU4 235 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 C11orf74Q86VG3 221 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 TERB1Q8NA31 727 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 SUMF1Q8NBK3 374 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 HINFPQ9BQA5 517 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 ZSWIM1Q9BR11 485 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 LHX5Q9H2C1 402 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 PLCB1Q9NQ66 1216 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 SAMSN1Q9NSI8 373 aaKnown RBP12.34□□□□□ -0.43
HDAC4-216ENST00000544989 DNAJC17Q9NVM6 304 aaKnown RBP12.34□□□□□ -0.43
HDAC4-216ENST00000544989 TMEM51Q9NW97 253 aa12.34□□□□□ -0.43
HDAC4-216ENST00000544989 SMG5Q9UPR3 1016 aaKnown RBP12.34□□□□□ -0.43
HDAC4-216ENST00000544989 USP24Q9UPU5 2620 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 NPC1O15118 1278 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 ZBTB24O43167 697 aaPredicted RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 GLI1P08151 1106 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 HMBSP08397 361 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SLC6A11P48066 632 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SLC11A2P49281 568 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 FNTBP49356 437 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 DGKGP49619 791 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 KDSRQ06136 332 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 RING1Q06587 406 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 C2orf27AQ580R0 203 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 KLHDC7AQ5VTJ3 777 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 NAIF1Q69YI7 327 aaPredicted RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 TPGS1Q6ZTW0 290 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 TMEM110Q86TL2 294 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 C12orf40Q86WS4 652 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 DENND1CQ8IV53 801 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 FAM217AQ8IXS0 508 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 PHTF2Q8N3S3 785 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 ZNF557Q8N988 423 aaPredicted RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 TSTD1Q8NFU3 115 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 WBP2Q969T9 261 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 AZIN2Q96A70 460 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 FAM149B1Q96BN6 582 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SERPINB11Q96P15 392 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 DDX50Q9BQ39 737 aaKnown RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SLC4A5Q9BY07 1137 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SLC2A11Q9BYW1 496 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 MIS12Q9H081 205 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 POLMQ9NP87 494 aaPredicted RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 SIX2Q9NPC8 291 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 NCDNQ9UBB6 729 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 AGO1Q9UL18 857 aaKnown RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 STARD13Q9Y3M8 1113 aa12.33□□□□□ -0.44
HDAC4-216ENST00000544989 MAP1BP46821 2468 aaKnown RBP12.33□□□□□ -0.44
HDAC4-216ENST00000544989 BECN2A8MW95 431 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 CAPN9O14815 690 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 AXIN1O15169 862 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 IRAK2O43187 625 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 FOXD2O60548 495 aaPredicted RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 LRP3O75074 770 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 PENKP01210 267 aaPredicted RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 KLKB1P03952 638 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 NCAM1P13591 858 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 UCHL3P15374 230 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 CDK11BP21127 795 aaKnown RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 SEC13P55735 322 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 MTA1Q13330 715 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 PDCLQ13371 301 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 BYSLQ13895 437 aaKnown RBP12.32□□□□□ -0.44
HDAC4-216ENST00000544989 RAPGEF1Q13905 1077 aa12.32□□□□□ -0.44
HDAC4-216ENST00000544989 SIM2Q14190 667 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms