RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 FYNP06241 537 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 CHRM1P11229 460 aaPredicted RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 ATP1A3P13637 1013 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 CYP11B1P15538 503 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 CDK11BP21127 795 aaKnown RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 CORO1AP31146 461 aaKnown RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 HOXA6P31267 233 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 KLK7P49862 253 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 NNTQ13423 1086 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 PPP2R5DQ14738 602 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 IQCB1Q15051 598 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 SYCP1Q15431 976 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 C12orf40Q86WS4 652 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 TMEM25Q86YD3 366 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 FMNL3Q8IVF7 1028 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 CCDC26Q8TAB7 109 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 DDX1Q92499 740 aaKnown RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 EDEM1Q92611 657 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 GOLGA1Q92805 767 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 NOX5Q96PH1 765 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 ST7Q9NRC1 585 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 FAM207AQ9NSI2 230 aaPredicted RBP13.7□□□□□ -0.22
LTBR-208ENST00000541005 FAM86C1Q9NVL1 165 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 STOML2Q9UJZ1 356 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 DOCK4Q8N1I0 1966 aa13.7□□□□□ -0.22
LTBR-208ENST00000541005 SLC12A8A0AV02 714 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 ATG13O75143 517 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 RNF40O75150 1001 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 LSM8O95777 96 aaKnown RBP13.69□□□□□ -0.22
LTBR-208ENST00000541005 CAVIN2O95810 425 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 KRT9P35527 623 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 CXCL12P48061 93 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 POLR2FP61218 127 aaKnown RBP13.69□□□□□ -0.22
LTBR-208ENST00000541005 UBXN1Q04323 297 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 RING1Q06587 406 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 SKOR2Q2VWA4 1001 aaPredicted RBP13.69□□□□□ -0.22
LTBR-208ENST00000541005 ZC3H14Q6PJT7 736 aaKnown RBP13.69□□□□□ -0.22
LTBR-208ENST00000541005 SCUBE3Q8IX30 993 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 CPXM2Q8N436 756 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 ZBTB44Q8NCP5 570 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 C1orf131Q8NDD1 294 aaKnown RBP13.69□□□□□ -0.22
LTBR-208ENST00000541005 EPS8L1Q8TE68 723 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 CPXM1Q96SM3 734 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 PNKPQ96T60 521 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 PHOX2BQ99453 314 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 MIS12Q9H081 205 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 ASNSD1Q9NWL6 643 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 WDR35Q9P2L0 1181 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 CEP83Q9Y592 693 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 PCDHGA2Q9Y5H1 932 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 VPS13AQ96RL7 3174 aa13.69□□□□□ -0.22
LTBR-208ENST00000541005 K7EQS6 105 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 K7ESF4 209 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 MSI1O43347 362 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 TULP3O75386 442 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 KAT7O95251 611 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 PENKP01210 267 aaPredicted RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 GLI1P08151 1106 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SOX5P35711 763 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 CHKAP35790 457 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 GRIA2P42262 883 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SLC6A11P48066 632 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SNX16P57768 344 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 ZNF445P59923 1031 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SATB1Q01826 763 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 CSTF1Q05048 431 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 MESP2Q0VG99 397 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 ANO4Q32M45 955 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 PREPLQ4J6C6 727 aaPredicted RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 PTPN20Q4JDL3 420 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 PKN3Q6P5Z2 889 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 NOP9Q86U38 636 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 ZNF677Q86XU0 584 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 PASD1Q8IV76 773 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 DQX1Q8TE96 717 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 PPP1R13BQ96KQ4 1090 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 BBS2Q9BXC9 721 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SEMA4AQ9H3S1 761 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 ZSCAN32Q9NX65 697 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 TJP2Q9UDY2 1190 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 SFMBT1Q9UHJ3 866 aa13.68□□□□□ -0.22
LTBR-208ENST00000541005 NOCTQ9UK39 431 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 AGO1Q9UL18 857 aaKnown RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 MUC22E2RYF6 1773 aaPredicted RBP13.68□□□□□ -0.22
LTBR-208ENST00000541005 NYNRINQ9P2P1 1898 aaKnown RBP13.67□□□□□ -0.22
LTBR-208ENST00000541005 SDK1Q7Z5N4 2213 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 CEP192Q8TEP8 1941 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 GFRA2O00451 464 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 LILRB5O75023 590 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 IGLV3-25P01717 112 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 ERBB2P04626 1255 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 APODP05090 189 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 HMBSP08397 361 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 NCAM1P13591 858 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 TYRP14679 529 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 HOXD11P31277 338 aaPredicted RBP13.67□□□□□ -0.22
LTBR-208ENST00000541005 HARS2P49590 506 aaKnown RBP13.67□□□□□ -0.22
LTBR-208ENST00000541005 NRLP54845 237 aa13.67□□□□□ -0.22
LTBR-208ENST00000541005 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
LTBR-208ENST00000541005 HSF5Q4G112 596 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms