RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SEMA6BQ9H3T3 888 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 AVENQ9NQS1 362 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 GIMAP4Q9NUV9 329 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 UBA2Q9UBT2 640 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-214ENST00000540539 IP6K2Q9UHH9 426 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 TAGLN3Q9UI15 199 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 NAGPAQ9UK23 515 aa9.77□□□□□ -0.84
CLIP1-214ENST00000540539 SF3B1O75533 1304 aaKnown RBP eCLIP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 SRCAPQ6ZRS2 3230 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 C1orf232A0A0U1RR37 186 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF213O14771 459 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 MTA2O94776 668 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 PRLP01236 227 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 MYL2P10916 166 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 CHRNA5P30532 468 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 IDUAP35475 653 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 GPD2P43304 727 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 EPHB1P54762 984 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 COPZ1P61923 177 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ECT2LQ008S8 904 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 GALNT2Q10471 571 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ASIC2Q16515 512 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ARL6IP4Q66PJ3 421 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 RHBDF2Q6PJF5 856 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF571Q7Z3V5 609 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 IFNL1Q8IU54 200 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 CMTR1Q8N1G2 835 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF276Q8N554 614 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 PAF1Q8N7H5 531 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ASCC1Q8N9N2 400 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 NEDD1Q8NHV4 660 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 ALG3Q92685 438 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 LSM14BQ9BX40 385 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 NOL6Q9H6R4 1146 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 LY9Q9HBG7 655 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 SPON1Q9HCB6 807 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 THG1LQ9NWX6 298 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 DCAF16Q9NXF7 216 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 IL20Q9NYY1 176 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 CACNA1SQ13698 1873 aa9.77□□□□□ -0.85
CLIP1-214ENST00000540539 GOLGB1Q14789 3259 aaKnown RBP9.77□□□□□ -0.85
CLIP1-214ENST00000540539 H3BNH8 94 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ERVH48-1M5A8F1 160 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CSDE1O75534 798 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 GH2P01242 217 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 FCER1AP12319 257 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PSMC3P17980 439 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 BTF3P20290 206 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TGM1P22735 817 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ADRA1DP25100 572 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PKLRP30613 574 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 HAAOP46952 286 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CLK1P49759 484 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 STX1BP61266 288 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 POU6F2P78424 691 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 LAPTM5Q13571 262 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 DNASE1L3Q13609 305 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TTC38Q5R3I4 469 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 SNAP47Q5SQN1 464 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 C6orf132Q5T0Z8 1188 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ALKBH5Q6P6C2 394 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TRAF7Q6Q0C0 670 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF600Q6ZNG1 722 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TBC1D10CQ8IV04 446 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CHERPQ8IWX8 916 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TTLQ8NG68 377 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 GRK7Q8WTQ7 553 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 BCL7CQ8WUZ0 217 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 NACC1Q96RE7 527 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 WRNIP1Q96S55 665 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 DOK1Q99704 481 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 NARFLQ9H6Q4 476 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 SYTL2Q9HCH5 934 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TCF7L2Q9NQB0 619 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 FARSBQ9NSD9 589 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 MROH5Q6ZUA9 1318 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ESYT2A0FGR8 921 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 INO80B-WBP1J3KQ70 363 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TYROBPO43914 113 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 DEXIO95424 95 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 GRM5P41594 1212 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PPP4CP60510 307 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ESRRGP62508 458 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CHRNDQ07001 517 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 UBE3CQ15386 1083 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 PKN2Q16513 984 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CARTPTQ16568 116 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 RARS2Q5T160 578 aaKnown RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 UTS2BQ765I0 119 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 SGMS1Q86VZ5 419 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 MINDY2Q8NBR6 621 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CATSPER1Q8NEC5 780 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 APPL2Q8NEU8 664 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 IGDCC4Q8TDY8 1250 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 CDKL2Q92772 493 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 ACDQ96AP0 544 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 OMA1Q96E52 524 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 TSSK1BQ9BXA7 367 aa9.76□□□□□ -0.85
CLIP1-214ENST00000540539 FRMD8Q9BZ67 464 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-214ENST00000540539 C1orf21Q9H246 121 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms