RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 STK32AQ8WU08 396 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 RNF139Q8WU17 664 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 UBE2TQ9NPD8 197 aaPredicted RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 DNAJC17Q9NVM6 304 aaKnown RBP12.1□□□□□ -0.47
RTN3-209ENST00000538995 STARD13Q9Y3M8 1113 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 DMXL1Q9Y485 3027 aa12.1□□□□□ -0.47
RTN3-209ENST00000538995 KIAA1549LQ6ZVL6 1849 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 SLC12A8A0AV02 714 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 YJEFN3A6XGL0 299 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 E7ENQ6 273 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 GOLGA6L22H0YM25 854 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 ALDH1A2O94788 518 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 KLF8O95600 359 aaPredicted RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 KLKB1P03952 638 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 ACADSBP45954 432 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 PXNP49023 591 aaPredicted RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 HARS2P49590 506 aaKnown RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 LMNB2Q03252 620 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 C10orf76Q5T2E6 689 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 TPGS1Q6ZTW0 290 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 FMNL3Q8IVF7 1028 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 SFTPA1Q8IWL2 248 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 FAM160A2Q8N612 972 aaPredicted RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 ALLCQ8N6M5 410 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 NAT16Q8N8M0 369 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 TXNDC5Q8NBS9 432 aaKnown RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 SHC3Q92529 594 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 GOLGA1Q92805 767 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 ZC3H10Q96K80 434 aaKnown RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 CRACR2AQ9BSW2 395 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 TRIM62Q9BVG3 475 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 FBXO10Q9UK96 956 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 AGO1Q9UL18 857 aaKnown RBP12.09□□□□□ -0.47
RTN3-209ENST00000538995 CACNA1AO00555 2505 aa12.09□□□□□ -0.47
RTN3-209ENST00000538995 PRR5-ARHGAP8B1AHC4 643 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 GABBR2O75899 941 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 LTFP02788 710 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 CYBBP04839 570 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 HMBSP08397 361 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 LCP1P13796 627 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 SDHBP21912 280 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 TGM1P22735 817 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 PON1P27169 355 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 GNA15P30679 374 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 HOXC13P31276 330 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 TIE1P35590 1138 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 GPD2P43304 727 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 ID4P47928 161 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 DGKGP49619 791 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 RGS7P49802 495 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 ARHGAP8P85298 464 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 LPAL2Q16609 132 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 FYB2Q5VWT5 728 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 RBM43Q6ZSC3 357 aaKnown RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 BEND5Q7L4P6 421 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 CREBRFQ8IUR6 639 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 DENND1CQ8IV53 801 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 CCDC33Q8N5R6 958 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 ZNF513Q8N8E2 541 aaPredicted RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 NDRG1Q92597 394 aaKnown RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 IRX2Q9BZI1 471 aaPredicted RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 POLMQ9NP87 494 aaPredicted RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 POLR3BQ9NW08 1133 aaPredicted RBP12.08□□□□□ -0.48
RTN3-209ENST00000538995 STOML2Q9UJZ1 356 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 SLC27A6Q9Y2P4 619 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 PCDHGA5Q9Y5G8 931 aa12.08□□□□□ -0.48
RTN3-209ENST00000538995 SGK1O00141 431 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 NPC1O15118 1278 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 THAP12O43422 761 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 ADAM23O75077 832 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 LETM1O95202 739 aaPredicted RBP12.07□□□□□ -0.48
RTN3-209ENST00000538995 EPN2O95208 641 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 CISD3P0C7P0 127 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 SLC9A1P19634 815 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 EEF1GP26641 437 aaKnown RBP12.07□□□□□ -0.48
RTN3-209ENST00000538995 RING1Q06587 406 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 NNTQ13423 1086 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 E2F5Q15329 346 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 ELF2Q15723 593 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 CSRP2Q16527 193 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 VWA3BQ502W6 1294 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 USP39Q53GS9 565 aaKnown RBP12.07□□□□□ -0.48
RTN3-209ENST00000538995 NUGGCQ68CJ6 796 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 ANO7Q6IWH7 933 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 TMEM92Q6UXU6 159 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 MDGA1Q8NFP4 955 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 ZNF606Q8WXB4 792 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 EDEM1Q92611 657 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 TUBGCP2Q9BSJ2 902 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 SLC4A5Q9BY07 1137 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 SLC2A11Q9BYW1 496 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 NDST4Q9H3R1 872 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 PARD6AQ9NPB6 346 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 USP18Q9UMW8 372 aa12.07□□□□□ -0.48
RTN3-209ENST00000538995 DCHS1Q96JQ0 3298 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 ANTXRLA6NF34 631 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 BECN2A8MW95 431 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 GFRA2O00451 464 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 TRIM24O15164 1050 aa12.06□□□□□ -0.48
RTN3-209ENST00000538995 RHOBTB1O94844 696 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms