RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CCDC163A0A0D9SF12 145 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 MED7O43513 233 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 CNR2P34972 360 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 TIE1P35590 1138 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 USP8P40818 1118 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 TNFRSF4P43489 277 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 KIR2DL1P43626 348 aaPredicted RBP15.47■□□□□ 0.07
USP28-204ENST00000537642 KCNMA1Q12791 1236 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 SIM2Q14190 667 aaPredicted RBP15.47■□□□□ 0.07
USP28-204ENST00000537642 TRIP4Q15650 581 aaPredicted RBP15.47■□□□□ 0.07
USP28-204ENST00000537642 LPAL2Q16609 132 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 MEA1Q16626 185 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 TCP11X2Q5H9J9 407 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 MSANTD2Q6P1R3 559 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 DENND1CQ8IV53 801 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 CCDC33Q8N5R6 958 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 TERB1Q8NA31 727 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 PLD4Q96BZ4 506 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 MIS12Q9H081 205 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 DNAJC17Q9NVM6 304 aaKnown RBP15.47■□□□□ 0.07
USP28-204ENST00000537642 CYTH4Q9UIA0 394 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 DNAJC12Q9UKB3 198 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 AGO1Q9UL18 857 aaKnown RBP15.47■□□□□ 0.07
USP28-204ENST00000537642 MMP17Q9ULZ9 603 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 SDK1Q7Z5N4 2213 aa15.47■□□□□ 0.07
USP28-204ENST00000537642 ZNF292O60281 2723 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 TBC1D3BA6NDS4 549 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 FBXO21O94952 628 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 APBB3O95704 486 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 LTFP02788 710 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 EEF1GP26641 437 aaKnown RBP15.46■□□□□ 0.07
USP28-204ENST00000537642 GRAMD4Q6IC98 578 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 PRR23BQ6ZRT6 265 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 C11orf57Q6ZUT1 292 aaPredicted RBP15.46■□□□□ 0.07
USP28-204ENST00000537642 ALLCQ8N6M5 410 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 IL17RCQ8NAC3 791 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 STK32AQ8WU08 396 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 BHMTQ93088 406 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 XPO6Q96QU8 1125 aaKnown RBP15.46■□□□□ 0.07
USP28-204ENST00000537642 HINFPQ9BQA5 517 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 SLC4A5Q9BY07 1137 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 ZDHHC4Q9NPG8 344 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 ST7Q9NRC1 585 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 PLK2Q9NYY3 685 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 NCDNQ9UBB6 729 aa15.46■□□□□ 0.07
USP28-204ENST00000537642 HBS1LQ9Y450 684 aaKnown RBP15.46■□□□□ 0.07
USP28-204ENST00000537642 SGK1O00141 431 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 FOXN3O00409 490 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 PES1O00541 588 aaKnown RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 AXIN1O15169 862 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 MSI1O43347 362 aaKnown RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 KLF8O95600 359 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 MBD3O95983 291 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 PENKP01210 267 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 FYNP06241 537 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 CISD3P0C7P0 127 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 PNMA6AP0CW24 399 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 HNRNPLP14866 589 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP28-204ENST00000537642 CHKAP35790 457 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 ACADSBP45954 432 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 HSF5Q4G112 596 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 PREPLQ4J6C6 727 aaPredicted RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 C10orf76Q5T2E6 689 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 CCDC183Q5T5S1 534 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 CDKAL1Q5VV42 579 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 FYB2Q5VWT5 728 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 SMYD5Q6GMV2 418 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 SASS6Q6UVJ0 657 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 TMEM92Q6UXU6 159 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 TOGARAM2Q6ZUX3 1019 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 SCUBE3Q8IX30 993 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 FAM217AQ8IXS0 508 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 CPXM2Q8N436 756 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 TXNDC5Q8NBS9 432 aaKnown RBP15.45■□□□□ 0.06
USP28-204ENST00000537642 GAB3Q8WWW8 586 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 TAB2Q9NYJ8 693 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 EBF1Q9UH73 591 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 FBXO10Q9UK96 956 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 HCN2Q9UL51 889 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 RAB23Q9ULC3 237 aa15.45■□□□□ 0.06
USP28-204ENST00000537642 PAPSS1O43252 624 aaPredicted RBP15.44■□□□□ 0.06
USP28-204ENST00000537642 ADAM23O75077 832 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 CLCN1P35523 988 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 DGKGP49619 791 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 CRY1Q16526 586 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 STX1AQ16623 288 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 KLHDC7AQ5VTJ3 777 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 LAIR1Q6GTX8 287 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 CEP68Q76N32 757 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 TMEM110Q86TL2 294 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 WDTC1Q8N5D0 677 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 TSTD1Q8NFU3 115 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 GOLGA1Q92805 767 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 ANO10Q9NW15 660 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 TJP2Q9UDY2 1190 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 PCDHGC3Q9UN70 934 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 STARD13Q9Y3M8 1113 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 FHOD1Q9Y613 1164 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 RALGAPA1Q6GYQ0 2036 aa15.44■□□□□ 0.06
USP28-204ENST00000537642 PRRT4C9JH25 899 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms