RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ACTR8Q9H981 624 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 SLC24A2Q9UI40 661 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 KIF1AQ12756 1690 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 SETD1BQ9UPS6 1966 aaKnown RBP10.94□□□□□ -0.66
CLIP1-209ENST00000537178 NR5A2O00482 541 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 CPA3P15088 417 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 ITGAXP20702 1163 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 ATP6V1C1P21283 382 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 FASP25445 335 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 ALDH7A1P49419 539 aaKnown RBP10.94□□□□□ -0.66
CLIP1-209ENST00000537178 TRIM25Q14258 630 aaKnown RBP10.94□□□□□ -0.66
CLIP1-209ENST00000537178 TFDP3Q5H9I0 405 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 SLC22A9Q8IVM8 553 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 SLC20A1Q8WUM9 679 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 OSCP1Q8WVF1 389 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 PPP1R10Q96QC0 940 aaKnown RBP10.94□□□□□ -0.66
CLIP1-209ENST00000537178 MAP3K14Q99558 947 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 ZNF518BQ9C0D4 1074 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 AHSPQ9NZD4 102 aa10.94□□□□□ -0.66
CLIP1-209ENST00000537178 UBA2Q9UBT2 640 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-209ENST00000537178 PNMA8CA0A1B0GUJ8 204 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 H7C4K7 107 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 TSC22D2O75157 780 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 CNPP09543 421 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 TPBGLP0DKB5 382 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PGS1Q32NB8 556 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PHACTR4Q8IZ21 702 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 THAP2Q9H0W7 228 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 ZFYVE28Q9HCC9 887 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 MIEF1Q9NQG6 463 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 AGPAT3Q9NRZ7 376 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GPRC5DQ9NZD1 345 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 LRP6O75581 1613 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PABPC1P11940 636 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 CYP2B6P20813 491 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GTF2E2P29084 291 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 IL5RAQ01344 420 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 COX10Q12887 443 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 MPP3Q13368 585 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 SCARF1Q14162 830 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GNASQ5JWF2 1037 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 TMEM139Q8IV31 216 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 MIER2Q8N344 545 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 ANKRD27Q96NW4 1050 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GPAMQ9HCL2 828 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 UBAP1Q9NZ09 502 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 TBX20Q9UMR3 447 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 DNALI1O14645 258 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 UBDO15205 165 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PLA2G6O60733 806 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 ZC3H11AO75152 810 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 BMP10O95393 424 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PSMB9P28065 219 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 AVPR1AP37288 418 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 FAM98BQ52LJ0 330 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 EPHX4Q8IUS5 362 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 ASZ1Q8WWH4 475 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GPRASP2Q96D09 838 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 OMA1Q96E52 524 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 NSMCE2Q96MF7 247 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 GLT1D1Q96MS3 346 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PHACTR1Q9C0D0 580 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 HDHD2Q9H0R4 259 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 DPP3Q9NY33 737 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 TRPC4Q9UBN4 977 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 BCL10O95999 233 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 RPL10AP62906 217 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 STX4Q12846 297 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 RASA2Q15283 850 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 NR6A1Q15406 480 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 ARMC3Q5W041 872 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 HHIPL2Q6UWX4 724 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 NECAB2Q7Z6G3 386 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 MICALL2Q8IY33 904 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 RTL3Q8N8U3 475 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 CRAMP1Q96RY5 1269 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 BDH2Q9BUT1 245 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 CYP4F12Q9HCS2 524 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 IARS2Q9NSE4 1012 aaKnown RBP10.93□□□□□ -0.66
CLIP1-209ENST00000537178 PCDHB7Q9Y5E2 793 aa10.93□□□□□ -0.66
CLIP1-209ENST00000537178 SF3B1O75533 1304 aaKnown RBP eCLIP10.93□□□□□ -0.668e-7■■■■■ 170.2
CLIP1-209ENST00000537178 NCF1BA6NI72 391 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-209ENST00000537178 NCF1CA8MVU1 366 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-209ENST00000537178 MEI4A8MW99 385 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 PDHBP11177 359 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 GZMAP12544 262 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 NCF1P14598 390 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-209ENST00000537178 PTPN4P29074 926 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 HALP42357 657 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 GLRBP48167 497 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 NFIL3Q16649 462 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 TBCELQ5QJ74 424 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 PDZK1Q5T2W1 519 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 STRA8Q7Z7C7 330 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 SLFN11Q7Z7L1 901 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 CASKIN2Q8WXE0 1202 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 PIK3R5Q8WYR1 880 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 PAFAH2Q99487 392 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 VAV3Q9UKW4 847 aa10.92□□□□□ -0.66
CLIP1-209ENST00000537178 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms