RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 LSMEM2Q8N112 164 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 MEIOBQ8N635 442 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 OTUB2Q96DC9 234 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 SIPA1Q96FS4 1042 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 VCPIP1Q96JH7 1222 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 KCTD15Q96SI1 283 aaPredicted RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 TSPAN18Q96SJ8 248 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 ELF4Q99607 663 aaPredicted RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 PKMYT1Q99640 499 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 NUP58Q9BVL2 599 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 C6orf106Q9H6K1 298 aaPredicted RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 ASCL3Q9NQ33 180 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 SPHK2Q9NRA0 654 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 THSD1Q9NS62 852 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 RBM19Q9Y4C8 960 aaKnown RBP6.88□□□□□ -1.31
CD44-237ENST00000534082 STON1Q9Y6Q2 735 aa6.88□□□□□ -1.31
CD44-237ENST00000534082 LRBAP50851 2863 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 NEDD8-MDP1E9PL57 170 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 FAM189A1O60320 539 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 CACNG3O60359 315 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 HIP1RO75146 1068 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 MT-CO3P00414 261 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ABL1P00519 1130 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 MBL2P11226 248 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 ACADMP11310 421 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ITGB6P18564 788 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 EPHA8P29322 1005 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 GMPRP36959 345 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 C21orf59P57076 290 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 MYL7Q01449 175 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 CBLBQ13191 982 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 TMEM132DQ14C87 1099 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 SHBQ15464 509 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 KYAT1Q16773 422 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 LINC00303Q3SY05 128 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 SV2CQ496J9 727 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 PRAMEF14Q5SWL7 426 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 CCDC81Q6ZN84 652 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 TMPRSS6Q8IU80 811 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 SPATA2LQ8IUW3 424 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 BBS7Q8IWZ6 715 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 PDCL2Q8N4E4 241 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ERMNQ8TAM6 284 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 SAP25Q8TEE9 199 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 PRCCQ92733 491 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 LIN37Q96GY3 246 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 FUBP3Q96I24 572 aaKnown RBP eCLIP6.87□□□□□ -1.31
CD44-237ENST00000534082 JAKMIP1Q96N16 626 aaKnown RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 MMS19Q96T76 1030 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ACBD6Q9BR61 282 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ACE2Q9BYF1 805 aaPredicted RBP6.87□□□□□ -1.31
CD44-237ENST00000534082 AGXT2Q9BYV1 514 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 TRIM9Q9C026 710 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 GJB4Q9NTQ9 266 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 PGPEP1Q9NXJ5 209 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 ADAMTS1Q9UHI8 967 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 GTF3C4Q9UKN8 822 aa6.87□□□□□ -1.31
CD44-237ENST00000534082 SCN1AP35498 2009 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 ZFHX3Q15911 3703 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 NBASA2RRP1 2371 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 KPNA7A9QM74 516 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 H3BM21 787 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 VILLO15195 856 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 YKT6O15498 198 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 FSBPO95073 299 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 ADRB2P07550 413 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 FAM87AP0C7U9 286 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 CKMT2P17540 419 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 XBP1P17861 261 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 RPS6KB1P23443 525 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 CD27P26842 260 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 ACSL1P33121 698 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 MAGEA11P43364 429 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 AFMP43652 599 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 LSSP48449 732 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 ZNF132P52740 706 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 COPAP53621 1224 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 ST3GAL1Q11201 340 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 MAPK7Q13164 816 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 HAUS3Q68CZ6 603 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 CPLX2Q6PUV4 134 aaKnown RBP6.86□□□□□ -1.31
CD44-237ENST00000534082 BLOC1S2Q6QNY1 142 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 XKR5Q6UX68 686 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 DENND5BQ6ZUT9 1274 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 FBXL16Q8N461 479 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 FAM26EQ8N5C1 309 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 TMEM161BQ8NDZ6 487 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 BIRC7Q96CA5 298 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 BICD1Q96G01 975 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 SPATA17Q96L03 361 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 XPO6Q96QU8 1125 aaKnown RBP6.86□□□□□ -1.31
CD44-237ENST00000534082 TTLL2Q9BWV7 592 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 TMEM60Q9H2L4 133 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 POLR1BQ9H9Y6 1135 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 DDX43Q9NXZ2 648 aaKnown RBP6.86□□□□□ -1.31
CD44-237ENST00000534082 LRWD1Q9UFC0 647 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 L1RE1Q9UN81 338 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 DERAQ9Y315 318 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 SH3BP1Q9Y3L3 701 aa6.86□□□□□ -1.31
CD44-237ENST00000534082 TCHHQ07283 1943 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms