RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 YWHAZP63104 245 aaKnown RBP13.56□□□□□ -0.24
VPS28-216ENST00000533806 GOLGA8FQ08AF8 430 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 GOLGA8DPQ0D2H9 430 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 GRSF1Q12849 480 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS28-216ENST00000533806 ANGPT1Q15389 498 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 TAF5Q15542 800 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 SYPL2Q5VXT5 272 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 C12orf40Q86WS4 652 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 ZNF677Q86XU0 584 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 FMNL3Q8IVF7 1028 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 RNF139Q8WU17 664 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 SLC20A1Q8WUM9 679 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 BAP1Q92560 729 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 CD101Q93033 1021 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 PLD4Q96BZ4 506 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 DCLK3Q9C098 648 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 PRMT8Q9NR22 394 aaPredicted RBP13.56□□□□□ -0.24
VPS28-216ENST00000533806 ASNSD1Q9NWL6 643 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 STRIP2Q9ULQ0 834 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 NAALADL1Q9UQQ1 740 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 MYO16Q9Y6X6 1858 aa13.56□□□□□ -0.24
VPS28-216ENST00000533806 H0Y858 1186 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 EGFP01133 1207 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 IGLV3-25P01717 112 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 CYP1A1P04798 512 aaPredicted RBP13.55□□□□□ -0.24
VPS28-216ENST00000533806 MMEP08473 750 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 TDGF1P13385 188 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 NCAM1P13591 858 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 CORO1AP31146 461 aaKnown RBP13.55□□□□□ -0.24
VPS28-216ENST00000533806 FANCCQ00597 558 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 FMO1Q01740 532 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 CDR2Q01850 454 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 NHLH1Q02575 133 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 GAD2Q05329 585 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 RING1Q06587 406 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 LRRC32Q14392 662 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 TAF3Q5VWG9 929 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 OLFML1Q6UWY5 402 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 Q6ZS52 159 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 SPEM1Q8N4L4 309 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 TMEM35BQ8NCS4 154 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 OLIG1Q8TAK6 271 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 DQX1Q8TE96 717 aaKnown RBP13.55□□□□□ -0.24
VPS28-216ENST00000533806 NELL1Q92832 810 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 SLC39A13Q96H72 371 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 SLC2A13Q96QE2 648 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 SPAG5Q96R06 1193 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 TTYH3Q9C0H2 523 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 POPDC2Q9HBU9 364 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 C2orf42Q9NWW7 574 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 LSM7Q9UK45 103 aaKnown RBP13.55□□□□□ -0.24
VPS28-216ENST00000533806 FBXO10Q9UK96 956 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 FBXO4Q9UKT5 387 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 ZNF510Q9Y2H8 683 aa13.55□□□□□ -0.24
VPS28-216ENST00000533806 CHURC1-FNTBB4DL54 471 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 K7EQS6 105 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 MSI1O43347 362 aaKnown RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 PAPSS2O95340 614 aaPredicted RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 PENKP01210 267 aaPredicted RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 HMBSP08397 361 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 NOMO3P69849 1222 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 NNTQ13423 1086 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 ZNF528Q3MIS6 628 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 FBXO43Q4G163 708 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 FILIP1LQ4L180 1135 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 PKN3Q6P5Z2 889 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 FAM183BPQ6ZVS7 135 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 SLC26A9Q7LBE3 791 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 IRF2BP2Q7Z5L9 587 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 DENND1CQ8IV53 801 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 SFTPA1Q8IWL2 248 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 CPXM2Q8N436 756 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 ZNF397Q8NF99 534 aaPredicted RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 AZIN2Q96A70 460 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 PCMTD1Q96MG8 357 aaPredicted RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 NOX5Q96PH1 765 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 PCDHB18PQ96TA0 734 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 SYT11Q9BT88 431 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 TRIM62Q9BVG3 475 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 IRF2BPLQ9H1B7 796 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 SPATA6Q9NWH7 488 aaPredicted RBP13.54□□□□□ -0.24
VPS28-216ENST00000533806 WDR35Q9P2L0 1181 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 MYO6Q9UM54 1294 aa13.54□□□□□ -0.24
VPS28-216ENST00000533806 ANTXRLA6NF34 631 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 CACNG3O60359 315 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 TULP3O75386 442 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 LATS1O95835 1130 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 CISD3P0C7P0 127 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 SP9P0CG40 484 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 UNGP13051 313 aaPredicted RBP13.53□□□□□ -0.24
VPS28-216ENST00000533806 CHKAP35790 457 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 SCNN1AP37088 669 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 PITX1P78337 314 aaPredicted RBP13.53□□□□□ -0.24
VPS28-216ENST00000533806 SLC6A3Q01959 620 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 FIGNQ5HY92 759 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 EFHC1Q5JVL4 640 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 FYB2Q5VWT5 728 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 RNF43Q68DV7 783 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 LRSAM1Q6UWE0 723 aa13.53□□□□□ -0.24
VPS28-216ENST00000533806 XYLT1Q86Y38 959 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms