RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 Q6ZNB5 142 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 TOGARAM2Q6ZUX3 1019 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 PIGZQ86VD9 579 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 DEFB119Q8N690 84 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 ANKRD52Q8NB46 1076 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 CEP76Q8TAP6 659 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 UCMAQ8WVF2 138 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 TATDN2Q93075 761 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 IPO9Q96P70 1041 aaKnown RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 ACOX2Q99424 681 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 ARID3AQ99856 593 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 LRRC4Q9HBW1 653 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 CACNA2D2Q9NY47 1150 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 ARMCX3Q9UH62 379 aaPredicted RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 EVLQ9UI08 416 aaPredicted RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 MYO16Q9Y6X6 1858 aa15.46■□□□□ 0.06
VPS28-215ENST00000531924 EML5Q05BV3 1969 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 KIAA1549LQ6ZVL6 1849 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 A0A1W2PQF6 199 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 SLC12A8A0AV02 714 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 PRRT4C9JH25 899 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 NDUFS2O75306 463 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 ZBED1O96006 694 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 ITPKAP23677 461 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 PMLP29590 882 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 HOXD12P35452 270 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 ARID5AQ03989 594 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 GFPT1Q06210 699 aaPredicted RBP15.45■□□□□ 0.06
VPS28-215ENST00000531924 CUL2Q13617 745 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 GOLGA7BQ2TAP0 167 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 SGO2Q562F6 1265 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 SH3PXD2AQ5TCZ1 1133 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 KIAA1324Q6UXG2 1013 aaKnown RBP15.45■□□□□ 0.06
VPS28-215ENST00000531924 RABEPKQ7Z6M1 372 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 DENND1CQ8IV53 801 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 FMR1NBQ8N0W7 255 aaPredicted RBP15.45■□□□□ 0.06
VPS28-215ENST00000531924 RNF139Q8WU17 664 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 CYP8B1Q9UNU6 501 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 RAD54BQ9Y620 910 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 ACACBO00763 2458 aa15.45■□□□□ 0.06
VPS28-215ENST00000531924 TPRP12270 2363 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 ATXN2Q99700 1313 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 LAMA1P25391 3075 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 GFRA2O00451 464 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 PSMA7O14818 248 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 NPC1O15118 1278 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 SYNCRIPO60506 623 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 KLKB1P03952 638 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 CISD3P0C7P0 127 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 NDUFV2P19404 249 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 HARS2P49590 506 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 BCAT1P54687 386 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 LRRC63Q05C16 580 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 ZNF252P-AS1Q0IIN9 211 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 DUOXA1Q1HG43 343 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 CBWD6Q4V339 395 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 CBWD3Q5JTY5 395 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 CBWD5Q5RIA9 395 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 ANKRD40Q6AI12 368 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 SIX6OS1Q8N1H7 587 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 HDDC3Q8N4P3 179 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 DDI1Q8WTU0 396 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 GABRG3Q99928 467 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 GTPBP2Q9BX10 602 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 SLC32A1Q9H598 525 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 OLA1Q9NTK5 396 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 TMEM74BQ9NUR3 256 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 PILRBQ9UKJ0 227 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 TSPAN16Q9UKR8 245 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 AGO1Q9UL18 857 aaKnown RBP15.44■□□□□ 0.06
VPS28-215ENST00000531924 SLC6A14Q9UN76 642 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 STON1Q9Y6Q2 735 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 MYH10P35580 1976 aa15.44■□□□□ 0.06
VPS28-215ENST00000531924 CDX4O14627 284 aaPredicted RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 XPO1O14980 1071 aaKnown RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 CEACAM1P13688 526 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 ENGP17813 658 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 CSRP1P21291 193 aaKnown RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 TBXAS1P24557 533 aaPredicted RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 MCCD1P59942 119 aaPredicted RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 NUCB2P80303 420 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 ZNF33AQ06730 810 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 BST2Q10589 180 aaKnown RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 CETN1Q12798 172 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 LRMPQ12912 555 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 CCDC40Q4G0X9 1142 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 SYCP2LQ5T4T6 812 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 KIAA1211LQ6NV74 962 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 SLC23A3Q6PIS1 610 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 ANKS1BQ7Z6G8 1248 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 RGL4Q8IZJ4 473 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 PLD4Q96BZ4 506 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 ULBP1Q9BZM6 244 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 CIPCQ9C0C6 399 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 METTL14Q9HCE5 456 aaKnown RBP15.43■□□□□ 0.06
VPS28-215ENST00000531924 HCN2Q9UL51 889 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 KIAA1257Q9ULG3 409 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 SLC27A6Q9Y2P4 619 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 MYOFQ9NZM1 2061 aa15.43■□□□□ 0.06
VPS28-215ENST00000531924 EPG5Q9HCE0 2579 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms