RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 FAM71BQ8TC56 605 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 ADAMTS18Q8TE60 1221 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 HASPINQ8TF76 798 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 OVCA2Q8WZ82 227 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 DPF1Q92782 380 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 RITA1Q96K30 269 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 PRPF18Q99633 342 aaKnown RBP5.06□□□□□ -1.6
CD44-215ENST00000525241 EPS8L2Q9H6S3 715 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 USP29Q9HBJ7 922 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 FZD4Q9ULV1 537 aa5.06□□□□□ -1.6
CD44-215ENST00000525241 SCAF8Q9UPN6 1271 aaKnown RBP5.06□□□□□ -1.6
CD44-215ENST00000525241 PNMA6EA0A0J9YXQ4 647 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 LINC01548A6NM66 108 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 BTBD19C9JJ37 291 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 POC1B-GALNT4F8VUJ3 575 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 CTIFO43310 598 aaKnown RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 SKAP2O75563 359 aaPredicted RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 TNFRSF6BO95407 300 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 PRKCGP05129 697 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 ITGA5P08648 1049 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 ZNF37AP17032 561 aaPredicted RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 GALNSP34059 522 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 TUBA4AP68366 448 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 ICA1Q05084 483 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 CCDC15Q0P6D6 951 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 SEMA3BQ13214 749 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 BFSP2Q13515 415 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 FAM187BQ17R55 369 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 TUBB8Q3ZCM7 444 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 ZACNQ401N2 412 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 TMEM63BQ5T3F8 832 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 CCDC144NLQ6NUI1 221 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 MSANTD2Q6P1R3 559 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 SERPINA13PQ6UXR4 307 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 ZNF782Q6ZMW2 699 aaPredicted RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 GALNT4Q8N4A0 578 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 PNLDC1Q8NA58 520 aaKnown RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 ZNF764Q96H86 408 aaPredicted RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 CCDC17Q96LX7 622 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 FYTTD1Q96QD9 318 aaKnown RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 ARPC5LQ9BPX5 153 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 CINPQ9BW66 212 aaPredicted RBP5.05□□□□□ -1.6
CD44-215ENST00000525241 SEMA5BQ9P283 1151 aa5.05□□□□□ -1.6
CD44-215ENST00000525241 GXYLT2A0PJZ3 443 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 PRRT4C9JH25 899 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 M0QZQ0 153 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 CLIC1O00299 241 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 FYB1O15117 783 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 USP1O94782 785 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 CHRM5P08912 532 aaPredicted RBP5.04□□□□□ -1.6
CD44-215ENST00000525241 KLRK1P26718 216 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 SERPINF1P36955 418 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 GSTM5P46439 218 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 RAE1P78406 368 aaKnown RBP5.04□□□□□ -1.6
CD44-215ENST00000525241 MFSD13AQ14CX5 517 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 LARS2Q15031 903 aaKnown RBP5.04□□□□□ -1.6
CD44-215ENST00000525241 C4orf46Q504U0 113 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 AWAT1Q58HT5 328 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 FAM83BQ5T0W9 1011 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 DCDC5Q6ZRR9 648 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 PTF1AQ7RTS3 328 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 OR1N1Q8NGS0 311 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 EID2BQ96D98 161 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 ASB2Q96Q27 587 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 PAAF1Q9BRP4 392 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 TP63Q9H3D4 680 aaPredicted RBP5.04□□□□□ -1.6
CD44-215ENST00000525241 PTGFRNQ9P2B2 879 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 PCDHB2Q9Y5E7 798 aa5.04□□□□□ -1.6
CD44-215ENST00000525241 CCDC187A0A096LP49 1063 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 UBE2Q2LH0YL09 131 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 SYT5O00445 386 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 DNPH1O43598 174 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 PPFIA2O75334 1257 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 GCATO75600 419 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 LATS1O95835 1130 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 CSTBP04080 98 aaKnown RBP5.03□□□□□ -1.6
CD44-215ENST00000525241 ALADP13716 330 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 ALDH18A1P54886 795 aaKnown RBP5.03□□□□□ -1.6
CD44-215ENST00000525241 TRIM14Q14142 442 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 CSHL1Q14406 222 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 ELF2Q15723 593 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 P3H1Q32P28 736 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 TMEM65Q6PI78 240 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 TTC30AQ86WT1 665 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 GATAD2AQ86YP4 633 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 ATG16L2Q8NAA4 619 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 MCRS1Q96EZ8 462 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 HS6ST2Q96MM7 605 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 RMDN3Q96TC7 470 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 ABHD10Q9NUJ1 306 aa5.03□□□□□ -1.6
CD44-215ENST00000525241 ACKR2O00590 384 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 CER1O95813 267 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 CYP2A6P11509 494 aaPredicted RBP5.02□□□□□ -1.61
CD44-215ENST00000525241 MMP8P22894 467 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 IGHMBP2P38935 993 aaKnown RBP5.02□□□□□ -1.61
CD44-215ENST00000525241 JAK3P52333 1124 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 BLMHQ13867 455 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 KCNB1Q14721 858 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 CCDC38Q502W7 563 aa5.02□□□□□ -1.61
CD44-215ENST00000525241 ACSM6Q6P461 480 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms