RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 GLRA3O75311 464 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 LGALS2P05162 132 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 THP07101 528 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ERVK-10P10266 1014 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 FDFT1P37268 417 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 GRAMD4Q6IC98 578 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SCUBE1Q8IWY4 988 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 EIF1ADQ8N9N8 165 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ATXN2LQ8WWM7 1075 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 HTR3CQ8WXA8 447 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 PHF21BQ96EK2 531 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SH3GL2Q99962 352 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 MTFR1LQ9H019 292 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 LRRC40Q9H9A6 602 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SIX2Q9NPC8 291 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 A0A0B4J269 797 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 C17orf102A2RUQ5 167 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SIGLEC16A6NMB1 481 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 EPHX2P34913 555 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 VHLP40337 213 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 RECQLP46063 649 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ELF3P78545 371 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 FLOT2Q14254 428 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 TREML2Q5T2D2 321 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 WNK4Q96J92 1243 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SPATA17Q96L03 361 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 PDGFDQ9GZP0 370 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 BAZ2AQ9UIF9 1905 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ZC3H4Q9UPT8 1303 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 FAM237BA0A1B0GVD1 139 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 PDE5AO76074 875 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ASS1P00966 412 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 NUDT17P0C025 328 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 MCF2P10911 925 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 CHRM3P20309 590 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 FECHP22830 423 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 PTPN4P29074 926 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 CSHL1Q14406 222 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 SPDYAQ5MJ70 313 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 PLEKHH3Q7Z736 793 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 TTC30BQ8N4P2 665 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 HIC2Q96JB3 615 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 ACO2Q99798 780 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 DRC3Q9H069 523 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 FAM53CQ9NYF3 392 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 UTP6Q9NYH9 597 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 CDYLQ9Y232 598 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 URB1O60287 2271 aaKnown RBP12.05□□□□□ -0.48
SYNPO-204ENST00000519664 KIF1AQ12756 1690 aa12.05□□□□□ -0.48
SYNPO-204ENST00000519664 OAZ1P54368 228 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 PTPN20Q4JDL3 420 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 PTAR1Q7Z6K3 402 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 AGAP11Q8TF27 550 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 USP13Q92995 863 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 NAF1Q96HR8 494 aaKnown RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 MFSD14AQ96MC6 490 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 GAD1Q99259 594 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 KATNAL1Q9BW62 490 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 VANGL2Q9ULK5 521 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 XRN1Q8IZH2 1706 aaKnown RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SPATA31C2B4DYI2 1134 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 AHCYL1O43865 530 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 ENTPD5O75356 428 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 ADSSP30520 456 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 ATICP31939 592 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SLC6A3Q01959 620 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 EFEMP1Q12805 493 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 TCHHL1Q5QJ38 904 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 DCLRE1BQ9H816 532 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 RBM22Q9NW64 420 aaKnown RBP eCLIP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SUPT3HB4E1H0 165 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SUPT3HO75486 399 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 VAPBO95292 243 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 USP17L7P0C7H9 530 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 GHRP10912 638 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 PPARGP37231 505 aaPredicted RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 JAM2P57087 298 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 FAM183BPQ6ZVS7 135 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 DEFB107AQ8IZN7 70 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 RASGEF1CQ8N431 466 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 LGMNQ99538 433 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SNRNP25Q9BV90 132 aaKnown RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 MUC3BQ9H195 1237 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 CATSPERBQ9H7T0 1116 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 ITGA11Q9UKX5 1188 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 ARHGAP26Q9UNA1 814 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 PHGDHO43175 533 aaKnown RBP12.04□□□□□ -0.48
SYNPO-204ENST00000519664 DCXO43602 365 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SPIRE1Q08AE8 756 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 FAM83EQ2M2I3 478 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 SLC27A1Q6PCB7 646 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 CPXM1Q96SM3 734 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 APBA2Q99767 749 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 MECRQ9BV79 373 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 FICDQ9BVA6 458 aa12.04□□□□□ -0.48
SYNPO-204ENST00000519664 hCG_1818297A0A087WSY0 165 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 XPO1O14980 1071 aaKnown RBP12.03□□□□□ -0.48
SYNPO-204ENST00000519664 TM9SF1O15321 606 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 CALB2P22676 271 aa12.03□□□□□ -0.48
SYNPO-204ENST00000519664 FOXR2Q6PJQ5 311 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms