RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 LIN54Q6MZP7 749 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 PRMT9Q6P2P2 845 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 YTHDF3Q7Z739 585 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 AGAP11Q8TF27 550 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ZFP42Q96MM3 310 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 LACRTQ9GZZ8 138 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 XKR8Q9H6D3 395 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 NDFIP2Q9NV92 336 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ARHGEF33A8MVX0 844 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 FDPSP14324 419 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ATP6V1C1P21283 382 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 FASP25445 335 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ABL2P42684 1182 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ALDH5A1P51649 535 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 RAB15P59190 212 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 PRKCQQ04759 706 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 PWP1Q13610 501 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 MPP2Q14168 576 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 OCLNQ16625 522 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SHROOM1Q2M3G4 852 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SLC5A9Q2M3M2 681 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 C6orf183Q5T699 404 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SWSAP1Q6NVH7 229 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 CYP39A1Q9NYL5 469 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 GABBR1Q9UBS5 961 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 NUP50Q9UKX7 468 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF197O14709 1029 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SSNA1O43805 119 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ARF4P18085 180 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 GP5P40197 560 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SCNN1BP51168 640 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 MAPK10P53779 464 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 CCNIQ14094 377 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 ZFP1Q6P2D0 407 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 LDHDQ86WU2 507 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 TRPC4APQ8TEL6 797 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 OSCP1Q8WVF1 389 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 C18orf25Q96B23 403 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 C18orf8Q96DM3 657 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 CCDC115Q96NT0 180 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 SPON2Q9BUD6 331 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 AGO2Q9UKV8 859 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 PCDHGA10Q9Y5H3 936 aa8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-218ENST00000513024 C3P01024 1663 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 ITSN1Q15811 1721 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 A0A087X0T9 212 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 GAS2O43903 313 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM228BP0C875 321 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 PABPC1P11940 636 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 COILP38432 576 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 APLP1P51693 650 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 FBXW4P57775 412 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 GMFBP60983 142 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 POU5F1Q01860 360 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 NFIXQ14938 502 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 ACAP1Q15027 740 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 TYW3Q6IPR3 259 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 RBM44Q6ZP01 1051 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 ADGRF4Q8IZF3 695 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 TTC30BQ8N4P2 665 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 TSPAN14Q8NG11 270 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 OR8H1Q8NGG4 311 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 UCMAQ8WVF2 138 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 HDAC2Q92769 488 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 PROX1Q92786 737 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 C17orf80Q9BSJ5 609 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 C2orf40Q9H1Z8 148 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 DNAAF2Q9NVR5 837 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 PMF1-BGLAPU3KQ54 211 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 SMCO3A2RU48 225 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 RBP3P10745 1247 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 CYP19A1P11511 503 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 PDGFRAP16234 1089 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 NPR3P17342 541 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 ITGA7Q13683 1181 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 LPIN1Q14693 890 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 PKN2Q16513 984 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 EIF2S3LQ2VIR3 472 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 WDR72Q3MJ13 1102 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 MTDHQ86UE4 582 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 GPD1LQ8N335 351 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 SHCBP1Q8NEM2 672 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 LPAR1Q92633 364 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 MCEEQ96PE7 176 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 TMBIM4Q9HC24 238 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 TBC1D22BQ9NU19 505 aa8.96□□□□□ -0.97
LIMCH1-218ENST00000513024 MON2Q7Z3U7 1717 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 FAM92AA1XBS5 289 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 TMEM253P0C7T8 217 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ETS2P15036 469 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 DDR1Q08345 913 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ORC2Q13416 577 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 SUZ12Q15022 739 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 GJB7Q6PEY0 223 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ABRAXAS1Q6UWZ7 409 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 DHRSXQ8N5I4 330 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 FBXO25Q8TCJ0 367 aa8.96□□□□□ -0.98
LIMCH1-218ENST00000513024 ARHGEF26Q96DR7 871 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms