RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 TAP1Q03518 808 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 DNASE1L3Q13609 305 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 CSHL1Q14406 222 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 ZNF169Q14929 603 aaPredicted RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 RNASE12Q5GAN4 147 aaKnown RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 ATPAF1Q5TC12 328 aaPredicted RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 HECTD2Q5U5R9 776 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 LAIR1Q6GTX8 287 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 NFRKBQ6P4R8 1299 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 C16orf89Q6UX73 402 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 PARS2Q7L3T8 475 aaKnown RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 RAB11FIP2Q7L804 512 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 ANKRD18AQ8IVF6 992 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 CCDC117Q8IWD4 279 aaPredicted RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 FTSJ3Q8IY81 847 aaKnown RBP3.97□□□□□ -1.77
LSM6-205ENST00000507449 SIMC1Q8NDZ2 872 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 THAP4Q8WY91 577 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 NPIPB3Q92617 1050 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 TRAPPC9Q96Q05 1148 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 MACROD1Q9BQ69 325 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 TWSG1Q9GZX9 223 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 ABHD16BQ9H3Z7 469 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 CYP4F11Q9HBI6 524 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 KCNK9Q9NPC2 374 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 VPS45Q9NRW7 570 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 RXFP3Q9NSD7 469 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 AMFRQ9UKV5 643 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 ST3GAL5Q9UNP4 418 aa3.97□□□□□ -1.77
LSM6-205ENST00000507449 FAM90A20PA6NIJ5 464 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 SLC38A8A6NNN8 435 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 TISP43B9A030 160 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 NPHP1O15259 732 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 IRAK2O43187 625 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 ADH4P08319 380 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 PEPDP12955 493 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 DRD4P21917 467 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 ADRA1DP25100 572 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 MAPK9P45984 424 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 GSTM5P46439 218 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 SUMO2P61956 95 aaKnown RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 SIM1P81133 766 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 SF3A3Q12874 501 aaKnown RBP eCLIP3.96□□□□□ -1.78
LSM6-205ENST00000507449 LMAN2Q12907 356 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 SEMA3BQ13214 749 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 BFSP2Q13515 415 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 P3H1Q32P28 736 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 PLAC9Q5JTB6 97 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 FBXO47Q5MNV8 452 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 ANKRD16Q6P6B7 361 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 WDR53Q7Z5U6 358 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 CPOQ8IVL8 374 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 SIRT6Q8N6T7 355 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 PNPLA1Q8N8W4 532 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 WDR60Q8WVS4 1066 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 NEU4Q8WWR8 484 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 OVCA2Q8WZ82 227 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 RUBCNQ92622 972 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 CAVIN3Q969G5 261 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 EDC3Q96F86 508 aaKnown RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 KAZALD1Q96I82 304 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 TTPALQ9BTX7 342 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 TAF1DQ9H5J8 278 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 ELAC1Q9H777 363 aaKnown RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 G6PC2Q9NQR9 355 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 GGA3Q9NZ52 723 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 KIF17Q9P2E2 1029 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 LRIT1Q9P2V4 623 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 KCND3Q9UK17 655 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 CCNL1Q9UK58 526 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 GJD2Q9UKL4 321 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 ADAMTS5Q9UNA0 930 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 GTF2A1LQ9UNN4 478 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 C19orf53Q9UNZ5 99 aaPredicted RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 ZBTB1Q9Y2K1 713 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 PCDHB2Q9Y5E7 798 aa3.96□□□□□ -1.78
LSM6-205ENST00000507449 LRRFIP2Q9Y608 721 aaKnown RBP3.96□□□□□ -1.78
LSM6-205ENST00000507449 HEXIM1O94992 359 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 TTLL1O95922 423 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 TK1P04183 234 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 PYGLP06737 847 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 DLDP09622 509 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 APEHP13798 732 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 TACR2P21452 398 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 PROZP22891 400 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 THBS4P35443 961 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 CDK7P50613 346 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 DGKQP52824 942 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 EEFSECP57772 596 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 CYP4F2P78329 520 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 GPC5P78333 572 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 RAE1P78406 368 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 SMAD1Q15797 465 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 FAM187BQ17R55 369 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 FAM110CQ1W6H9 321 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 AAK1Q2M2I8 961 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 L1TD1Q5T7N2 865 aaKnown RBP3.95□□□□□ -1.78
LSM6-205ENST00000507449 PCSK4Q6UW60 755 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 KIRREL2Q6UWL6 708 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 TTC30AQ86WT1 665 aa3.95□□□□□ -1.78
LSM6-205ENST00000507449 LDLRAD3Q86YD5 345 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms