RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CPA6Q8N4T0 437 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 CEP112Q8N8E3 955 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 STKLD1Q8NE28 680 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 CCDC26Q8TAB7 109 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 TTC8Q8TAM2 541 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 FAM71BQ8TC56 605 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 ATP2A3Q93084 1043 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 SMARCD1Q96GM5 515 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 PCMTD1Q96MG8 357 aaPredicted RBP8.47□□□□□ -1.05
SCN1A-207ENST00000507401 KCNK16Q96T55 309 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 DUSP9Q99956 384 aaKnown RBP8.47□□□□□ -1.05
SCN1A-207ENST00000507401 IMPG2Q9BZV3 1241 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 ZNF518BQ9C0D4 1074 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 RNF38Q9H0F5 515 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 SDCBP2Q9H190 292 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 EPC1Q9H2F5 836 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 SMYD3Q9H7B4 428 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 ECT2Q9H8V3 914 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 VIPAS39Q9H9C1 493 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 TMEM8AQ9HCN3 771 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 CSNK1G1Q9HCP0 422 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 TRPC7Q9HCX4 862 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 DMAP1Q9NPF5 467 aaPredicted RBP8.47□□□□□ -1.05
SCN1A-207ENST00000507401 DUS2Q9NX74 493 aaKnown RBP8.47□□□□□ -1.05
SCN1A-207ENST00000507401 ADAM21Q9UKJ8 722 aa8.47□□□□□ -1.05
SCN1A-207ENST00000507401 EP300Q09472 2414 aaPredicted RBP8.46□□□□□ -1.05
SCN1A-207ENST00000507401 GVINP1Q7Z2Y8 2422 aa8.46□□□□□ -1.05
SCN1A-207ENST00000507401 CHURC1-FNTBB4DL54 471 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 CLDN5O00501 218 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 MAP2K7O14733 419 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 ARHGAP6O43182 974 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 OAS1P00973 400 aaKnown RBP8.46□□□□□ -1.06
SCN1A-207ENST00000507401 ZDHHC11BP0C7U3 371 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 GJA4P35212 333 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 PPP1R2P41236 205 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 PRCPP42785 496 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 ASPAP45381 313 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 GCLMP48507 274 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 IFNAR2P48551 515 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 TUBP50607 506 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 GALK1P51570 392 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 NDST1P52848 882 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 CACNA2D1P54289 1103 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 FKBP3Q00688 224 aaKnown RBP8.46□□□□□ -1.06
SCN1A-207ENST00000507401 USP4Q13107 963 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 PNOCQ13519 176 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 WDR44Q5JSH3 913 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 HECTD3Q5T447 861 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 TRIM68Q6AZZ1 485 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 TSSK4Q6SA08 328 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 ACOT1Q86TX2 421 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 LONP2Q86WA8 852 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 DDX42Q86XP3 938 aaKnown RBP eCLIP8.46□□□□□ -1.06
SCN1A-207ENST00000507401 C10orf67Q8IYJ2 551 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 RIN3Q8TB24 985 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 TAS1R2Q8TE23 839 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 SH3RF2Q8TEC5 729 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 HNRNPABQ99729 332 aaKnown RBP8.46□□□□□ -1.06
SCN1A-207ENST00000507401 P2RY13Q9BPV8 354 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 MED10Q9BTT4 135 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 NT5C1AQ9BXI3 368 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 LINC00597Q9H2U6 94 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 FBXO44Q9H4M3 255 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 TMEM30AQ9NV96 361 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 CHORDC1Q9UHD1 332 aaPredicted RBP8.46□□□□□ -1.06
SCN1A-207ENST00000507401 GPSM3Q9Y4H4 160 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 PCDHA5Q9Y5H7 936 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 SPTBN4Q9H254 2564 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 FRYLO94915 3013 aa8.46□□□□□ -1.06
SCN1A-207ENST00000507401 OTOGLQ3ZCN5 2332 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 A0A0A0MRY4 1105 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 E2F8A0AVK6 867 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 K7ESF4 209 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 LEFTY2O00292 366 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 SLC16A3O15427 465 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 NFATC1O95644 943 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 EPB41P11171 864 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 ARSAP15289 507 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 PIK3CAP42336 1068 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 RAP1GAPP47736 663 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 ZXDBP98169 803 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 SATB1Q01826 763 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 LRRC63Q05C16 580 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 DNAJC21Q5F1R6 531 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 FSTL4Q6MZW2 842 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 FOXR2Q6PJQ5 311 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 FAM35AQ86V20 835 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 ZC3H3Q8IXZ2 948 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 ZNF276Q8N554 614 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 CAMKK1Q8N5S9 505 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 MEIOBQ8N635 442 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 FBXL13Q8NEE6 735 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 SLC2A14Q8TDB8 520 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 SECISBP2LQ93073 1101 aaKnown RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 SMARCE1Q969G3 411 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 OTUB2Q96DC9 234 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 CHFRQ96EP1 664 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 CYFIP2Q96F07 1278 aa8.45□□□□□ -1.06
SCN1A-207ENST00000507401 DHTKD1Q96HY7 919 aaPredicted RBP8.45□□□□□ -1.06
SCN1A-207ENST00000507401 TSG101Q99816 390 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms