RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 SLCO1B7G3V0H7 640 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 IRF6O14896 467 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ALOX15BO15296 676 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 THRAP10827 490 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC130P13994 396 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ADRA1DP25100 572 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 GP5P40197 560 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 THPOP40225 353 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 PTGIRP43119 386 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ELF3P78545 371 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 IL1RL1Q01638 556 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 SREBF2Q12772 1141 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 TSTA3Q13630 321 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 TSHZ1Q6ZSZ6 1077 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 PCYOX1LQ8NBM8 494 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 CCDC138Q96M89 665 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF670Q9BS34 389 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ITGB4P16144 1822 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 COL1A2P08123 1366 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 NDUFS3O75489 264 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 STMN1P16949 149 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 OR1G1P47890 313 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 MPP3Q13368 585 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 TMEM154Q6P9G4 183 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 DEFB106AQ8N104 65 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 COPS5Q92905 334 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 ADAMTS7Q9UKP4 1686 aa11.09□□□□□ -0.63
LIMCH1-205ENST00000503057 EIF4E1BA6NMX2 242 aaKnown RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 RNF103O00237 685 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 ERBB2P04626 1255 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 SERPINE1P05121 402 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 HMBSP08397 361 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 EEF1B2P24534 225 aaKnown RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 NOVP48745 357 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 NPY2RP49146 381 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 RAB27AP51159 221 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 FCGRTP55899 365 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 CDK16Q00536 496 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 DYNC1I2Q13409 638 aaKnown RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 PDK4Q16654 411 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 C15orf59Q2T9L4 293 aaPredicted RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 IL31Q6EBC2 164 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 KYAT3Q6YP21 454 aaKnown RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 ZNF398Q8TD17 642 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 SMARCD1Q96GM5 515 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 SEPT5Q99719 369 aaPredicted RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 EGFL8Q99944 293 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 PHACTR1Q9C0D0 580 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 C10orf88Q9H8K7 445 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 GBA2Q9HCG7 927 aaPredicted RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 ANLNQ9NQW6 1124 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 PCDHGC3Q9UN70 934 aa11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 RUVBL2Q9Y230 463 aaKnown RBP11.08□□□□□ -0.63
LIMCH1-205ENST00000503057 PMPCBO75439 489 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 RECQLP46063 649 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 DSG1Q02413 1049 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC20A2Q08357 652 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 CYP1B1Q16678 543 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 KBTBD12Q3ZCT8 623 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TREML2Q5T2D2 321 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 N4BP2L1Q5TBK1 243 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TTC27Q6P3X3 843 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 NPNTQ6UXI9 565 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 DAW1Q8N136 415 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 GPR20Q99678 358 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 FHDC1Q9C0D6 1143 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 POPDC2Q9HBU9 364 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNH4Q9UQ05 1017 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 RNF103-CHMP3A0A140T963 221 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 E7ENQ6 273 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC1A6P48664 564 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 STKLD1Q8NE28 680 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TRPM4Q8TD43 1214 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 NCLNQ969V3 563 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 ACSS3Q9H6R3 686 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 ABI2Q9NYB9 513 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 HACD3Q9P035 362 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 PCDHA11Q9Y5I1 949 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 CLUHO75153 1309 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 NRCAMQ92823 1304 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 ARHGAP10A1A4S6 786 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 BNIP3LO60238 219 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 PYGLP06737 847 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 MGAT1P26572 445 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 HDAC4P56524 1084 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF280AP59817 542 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 RPL10AP62906 217 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 CDH17Q12864 832 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 RNF219Q5W0B1 726 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TAF2Q6P1X5 1199 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 EFL1Q7Z2Z2 1120 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TLK2Q86UE8 772 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 SHCBP1Q8NEM2 672 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 TSPAN18Q96SJ8 248 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 DERAQ9Y315 318 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 LOC100653049A0A140TA62 436 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 B4GALT5O43286 388 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 KRT34O76011 436 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 RECQL4O94761 1208 aa11.08□□□□□ -0.64
LIMCH1-205ENST00000503057 DNAJB2P25686 324 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms