RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RNF157Q96PX1 679 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SNRNP25Q9BV90 132 aaKnown RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 NSRP1Q9H0G5 558 aaKnown RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 ANKZF1Q9H8Y5 726 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SMARCAL1Q9NZC9 954 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ASB3Q9Y575 518 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 DOCK5Q9H7D0 1870 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 KCNN4O15554 427 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 XYLBO75191 536 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ITGAVP06756 1048 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 PEX5P50542 639 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 GPR17Q13304 367 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 LAMB3Q13751 1172 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CYP1B1Q16678 543 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 BSPRYQ5W0U4 402 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 DDX42Q86XP3 938 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP54-215ENST00000497106 ALG3Q92685 438 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 EXOC4Q96A65 974 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SP110Q9HB58 689 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 MIOSQ9NXC5 875 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ZMYM5Q9UJ78 669 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ATP8A1Q9Y2Q0 1164 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 F5H5T6 163 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 MOCS2O96007 188 aaPredicted RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 SOD2P04179 222 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 NFKBIAP25963 317 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 NDUFV1P49821 464 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 DSC1Q08554 894 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ANKRD20A8PQ5CZ79 823 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 KCNT2Q6UVM3 1135 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CCDC91Q7Z6B0 441 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 ATP11CQ8NB49 1132 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 NKIRAS1Q9NYS0 192 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SHOC2Q9UQ13 582 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 HMGB1P1B2RPK0 211 aaPredicted RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 PDE2AO00408 941 aaPredicted RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 PFDN6O15212 129 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 GALTP07902 379 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SLC5A3P53794 718 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 AP1B1Q10567 949 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 TRIP13Q15645 432 aaPredicted RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 CLLU1OSQ5K130 101 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CHSY1Q86X52 802 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 GPR65Q8IYL9 337 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 CD101Q93033 1021 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 TRIM51Q9BSJ1 452 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 SIK2Q9H0K1 926 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 XAB2Q9HCS7 855 aaKnown RBP8.68□□□□□ -1.02
USP54-215ENST00000497106 DNMT3LQ9UJW3 386 aa8.68□□□□□ -1.02
USP54-215ENST00000497106 A0A087WUV0 522 aaPredicted RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 C2CD2LO14523 706 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 TLL1O43897 1013 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 GJB6O95452 261 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 EPHB2P29323 1055 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 GARSP41250 739 aaKnown RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 KCNT1Q5JUK3 1230 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CCNJLQ8IV13 435 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 ACTL9Q8TC94 416 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PYROXD1Q8WU10 500 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PLEKHA4Q9H4M7 779 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 FNIP2Q9P278 1114 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 TRHDEQ9UKU6 1024 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 TLDC2A0PJX2 215 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 KIAA0355O15063 1070 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 NBNO60934 754 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 DNAJB2P25686 324 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CTNNB1P35222 781 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 FLT3P36888 993 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 C15orf59Q2T9L4 293 aaPredicted RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 HECTD3Q5T447 861 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CASKIN2Q8WXE0 1202 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PIK3R5Q8WYR1 880 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CASD1Q96PB1 797 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PIDD1Q9HB75 910 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CRTAC1Q9NQ79 661 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CLIC5Q9NZA1 410 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 VPS18Q9P253 973 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 HSFX1Q9UBD0 423 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SLC8A2Q9UPR5 921 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 ZNF510Q9Y2H8 683 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SH3BP1Q9Y3L3 701 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SLC12A8A0AV02 714 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 LIASO43766 372 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SEC31AO94979 1220 aaKnown RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 ATP5C1P36542 298 aaKnown RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 STAT4Q14765 748 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 LLGL1Q15334 1064 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 HIF1AQ16665 826 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 CASC4Q6P4E1 433 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 FAM171BQ6P995 826 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 ZC3H18Q86VM9 953 aaKnown RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 TAX1BP1Q86VP1 789 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PRELID2Q8N945 189 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 FBXO22Q8NEZ5 403 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 PHOSPHO2Q8TCD6 241 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SLCO2A1Q92959 643 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 NKD2Q969F2 451 aaPredicted RBP8.67□□□□□ -1.02
USP54-215ENST00000497106 IGSF21Q96ID5 467 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 SCML2Q9UQR0 700 aa8.67□□□□□ -1.02
USP54-215ENST00000497106 HBS1LQ9Y450 684 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms