RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ESRRAP11474 423 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 RASSF2P50749 326 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 RABGGTBP53611 331 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 ALDH18A1P54886 795 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 ACVR2BQ13705 512 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 BLMHQ13867 455 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 BSPRYQ5W0U4 402 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 ARMC2Q8NEN0 867 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 USP6NLQ92738 828 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 TTC1Q99614 292 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 ACSS3Q9H6R3 686 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 PCDH18Q9HCL0 1135 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 IL1RAPL1Q9NZN1 696 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 CACNG4Q9UBN1 327 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 C2CD2Q9Y426 696 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 SYNJ2BP-COX16A0A087WUM0 186 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 TCRBV9S1A1TA0A576 114 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 CXorf49A8MYA2 514 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 APRTP07741 180 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 MMP3P08254 477 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 PHBP35232 272 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 BCAR1P56945 870 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 SNX30Q5VWJ9 437 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 TRIM55Q9BYV6 548 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 USP29Q9HBJ7 922 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 ACSS2Q9NR19 701 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 COX16Q9P0S2 106 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 PPARGC1AQ9UBK2 798 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC24A2Q9UI40 661 aa17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 SMG5Q9UPR3 1016 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-210ENST00000494566 DOCK3Q8IZD9 2030 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 PLXNB2O15031 1838 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 A8MXQ7 604 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 IGFBP6P24592 240 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 SDC4P31431 198 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 HDAC4P56524 1084 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 ZNF200P98182 395 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 UNC5BQ8IZJ1 945 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 SCG3Q8WXD2 468 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 TMPRSS4Q9NRS4 437 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 CLEC11AQ9Y240 323 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 MAD1L1Q9Y6D9 718 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 TRIP12Q14669 1992 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 CCL15-CCL14A0A0B4J2E2 113 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 DYNC1LI2O43237 492 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 INHBAP08476 426 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 PTPN4P29074 926 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 GBE1Q04446 702 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 PEX6Q13608 980 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 HIC1Q14526 733 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 CCL15Q16663 113 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 C4orf50Q6ZRC1 276 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 IFNLR1Q8IU57 520 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 ARID3BQ8IVW6 561 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 PYROXD2Q8N2H3 581 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 IQCGQ9H095 443 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 RNF39Q9H2S5 420 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 DHX35Q9H5Z1 703 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 VTA1Q9NP79 307 aa17.13■□□□□ 0.33
CCDC88B-210ENST00000494566 TRIM49D1C9J1S8 452 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 E7ESA3 106 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 TBX10O75333 385 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 SORBS2O94875 1100 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 CRADDP78560 199 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 SOWAHAQ2M3V2 549 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 ADGRD1Q6QNK2 874 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 MZB1Q8WU39 189 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 PACSIN3Q9UKS6 424 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 SPTLC1O15269 473 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 NVLO15381 856 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 RECQL4O94761 1208 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 ENDOD1O94919 500 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 ZBED1O96006 694 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 GRM5P41594 1212 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 GRIA1P42261 906 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 POLE2P56282 527 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 KCNJ11Q14654 390 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 CTC1Q2NKJ3 1217 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 MROH9Q5TGP6 573 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 POU5F2Q8N7G0 328 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 TMEM40Q8WWA1 233 aa17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC88B-210ENST00000494566 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 B2RBV5 119 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 FCHO1O14526 889 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 APOL1O14791 398 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 NEK3P51956 506 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC6A3Q01959 620 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 POU5F1BQ06416 359 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 SLC10A2Q12908 348 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 GPR142Q7Z601 462 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 NPLOC4Q8TAT6 608 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 RILPQ96NA2 401 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 CEP41Q9BYV8 373 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 TAS2R1Q9NYW7 299 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 HESX1Q9UBX0 185 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 ZSWIM8A7E2V4 1837 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 GSC2O15499 205 aa17.11■□□□□ 0.33
CCDC88B-210ENST00000494566 CCNA1P78396 465 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms