RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PDPRQ8NCN5 879 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TFAP2CQ92754 450 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 FKBP10Q96AY3 582 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 AGBL1Q96MI9 1066 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SRPK1Q96SB4 655 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PFDN4Q9NQP4 134 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ANAPC5Q9UJX4 755 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MDM4O15151 490 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 UGT2B4P06133 528 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 COPB2P35606 906 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 BTDP43251 543 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 VAMP7P51809 220 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RPS3AP61247 264 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 USP46P62068 366 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 RHDQ02161 417 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 SFT2D3Q587I9 215 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ZC3H12BQ5HYM0 836 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ARHGEF16Q5VV41 709 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 PPP1R12CQ9BZL4 782 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 AK5Q9Y6K8 562 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MN1Q10571 1320 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 USP17L10C9JJH3 530 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TRMUO75648 421 aaKnown RBP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TROVE2P10155 538 aaKnown RBP eCLIP5.54□□□□□ -1.52
SYNE1-220ENST00000471834 AMPD1P23109 780 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CYP2J2P51589 502 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 DSG1Q02413 1049 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 NIPAL4Q0D2K0 466 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF394Q53GI3 561 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 FKBP9P1Q75LS8 142 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM135Q86UB9 458 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 CHCHD4Q8N4Q1 142 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 MTMR14Q8NCE2 650 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 FEM1CQ96JP0 617 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 BCO2Q9BYV7 579 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 THAP1Q9NVV9 213 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 HEY2Q9UBP5 337 aa5.54□□□□□ -1.52
SYNE1-220ENST00000471834 H0YCG3 227 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SGPL1O95470 568 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 VNN1O95497 513 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PTPN1P18031 435 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 HSPA1LP34931 641 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SERPINB9P50453 376 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 YWHAZP63104 245 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SEMA3BQ13214 749 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 MED21Q13503 144 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GNPTABQ3T906 1256 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CCDC105Q8IYK2 499 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ANKFN1Q8N957 763 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PTCD2Q8WV60 388 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TTC9Q92623 222 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SH2D3AQ9BRG2 576 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CBWD1Q9BRT8 395 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 APOBEC3GQ9HC16 384 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 RAB20Q9NX57 234 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 HSPBP1Q9NZL4 362 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GGA1Q9UJY5 639 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 APPL1Q9UKG1 709 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 BAZ2AQ9UIF9 1905 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SLC15A5A6NIM6 579 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 NOP56O00567 594 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 HNRNPFP52597 415 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 MYL7Q01449 175 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PIGGQ5H8A4 983 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 FBXL19Q6PCT2 694 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 B3GNT6Q6ZMB0 384 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 RSPH3Q86UC2 560 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CNTN4Q8IWV2 1026 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SCUBE1Q8IWY4 988 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 LRRC47Q8N1G4 583 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CNTD1Q8N815 330 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ANKRD42Q8N9B4 389 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 LEMD2Q8NC56 503 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 NUP85Q9BW27 656 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CD320Q9NPF0 282 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SLC17A7Q9P2U7 560 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ADAM28Q9UKQ2 775 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 KLHL2O95198 593 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ALDOAP04075 364 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 RALAP11233 206 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 BMP3P12645 472 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ATF2P15336 505 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PXNP49023 591 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ATP6V0D1P61421 351 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SREBF2Q12772 1141 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PDE1CQ14123 709 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 KRT81Q14533 505 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 DOK7Q18PE1 504 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM68Q6AZZ1 485 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SETD3Q86TU7 594 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SP8Q8IXZ3 490 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 C12orf42Q96LP6 360 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CPVLQ9H3G5 476 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 EBF3Q9H4W6 596 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GPN2Q9H9Y4 310 aaPredicted RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TBC1D22BQ9NU19 505 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GINS2Q9Y248 185 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM98Q9Y2Y6 226 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 FAM196BA6NMK8 535 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TOP3BO95985 862 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms