RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 ACRBPQ8NEB7 543 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 TTC16Q8NEE8 873 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 JOSD2Q8TAC2 188 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 ADAM32Q8TC27 787 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 ADAMTS19Q8TE59 1207 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 SH3RF2Q8TEC5 729 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 WBP2Q969T9 261 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 TRIM11Q96F44 468 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 CDK5RAP1Q96SZ6 601 aaKnown RBP13.61□□□□□ -0.23
VPS33A-202ENST00000451053 TRIM62Q9BVG3 475 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 KLF16Q9BXK1 252 aaPredicted RBP13.61□□□□□ -0.23
VPS33A-202ENST00000451053 PACSIN1Q9BY11 444 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 GKN1Q9NS71 199 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.61□□□□□ -0.23
VPS33A-202ENST00000451053 PCDHA13Q9Y5I0 950 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 COL6A3P12111 3177 aa13.61□□□□□ -0.23
VPS33A-202ENST00000451053 SLC12A8A0AV02 714 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 LEFTY2O00292 366 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 DPYSL4O14531 572 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 KRT86O43790 486 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ECI2O75521 394 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 HMBSP08397 361 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 IRF1P10914 325 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 KRT3P12035 628 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 MATKP42679 507 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 GALCP54803 685 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 KIF5AQ12840 1032 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 MAMLD1Q13495 774 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ZNF77Q15935 545 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ARHGAP29Q52LW3 1261 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 PPP1R15BQ5SWA1 713 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 OTUD1Q5VV17 481 aaPredicted RBP13.6□□□□□ -0.23
VPS33A-202ENST00000451053 PLEKHA7Q6IQ23 1121 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 TAC4Q86UU9 113 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ELSPBP1Q96BH3 223 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ARHGEF26Q96DR7 871 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 SELENOOQ9BVL4 669 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ADAM33Q9BZ11 813 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 THAP2Q9H0W7 228 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 SMOC2Q9H3U7 446 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 KIF9Q9HAQ2 790 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 KCNK12Q9HB15 430 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 CD320Q9NPF0 282 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 OBP2AQ9NY56 170 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS33A-202ENST00000451053 CFAP97Q9P2B7 532 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 MYO1AQ9UBC5 1043 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 CNOT8Q9UFF9 292 aaKnown RBP13.6□□□□□ -0.23
VPS33A-202ENST00000451053 XIRP2A4UGR9 3374 aa13.6□□□□□ -0.23
VPS33A-202ENST00000451053 ANKRD62A6NC57 917 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 SIGLEC16A6NMB1 481 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 ESPNB1AK53 854 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 SCAMP3O14828 347 aaKnown RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 MYBL1P10243 752 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 TCF3P15923 654 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 TFE3P19532 575 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 NOS2P35228 1153 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 RFC1P35251 1148 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 RPL7AP62424 266 aaKnown RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 GRM2Q14416 872 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 CTNNBL1Q8WYA6 563 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 E2F7Q96AV8 911 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 MCEEQ96PE7 176 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 NPY6RQ99463 290 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 DDX23Q9BUQ8 820 aaKnown RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 PARVAQ9NVD7 372 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 CALCOCO1Q9P1Z2 691 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 IGSF9Q9P2J2 1179 aa13.59□□□□□ -0.23
VPS33A-202ENST00000451053 REXO2Q9Y3B8 237 aaKnown RBP13.59□□□□□ -0.23
VPS33A-202ENST00000451053 SYNJ2BP-COX16A0A087WUM0 186 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 C2CD4BA6NLJ0 364 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 PJA2O43164 708 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 IRAK2O43187 625 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 GREM1O60565 184 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 STC2O76061 302 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 TRUB2O95900 331 aaKnown RBP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 IGLV3-25P01717 112 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 CYP1A2P05177 515 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 TMEM253P0C7T8 217 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 SULT1E1P49888 294 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 COG7P83436 770 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 TRIP4Q15650 581 aaPredicted RBP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 ARCQ7LC44 396 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 DDX42Q86XP3 938 aaKnown RBP eCLIP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 MFSD6LQ8IWD5 586 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 GJD3Q8N144 294 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 SLC44A3Q8N4M1 653 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 BPIFB1Q8TDL5 484 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 RXFP2Q8WXD0 754 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 CALR3Q96L12 384 aaKnown RBP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 CFAP57Q96MR6 1250 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 SERPINB11Q96P15 392 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 TBCBQ99426 244 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 FAM204AQ9H8W3 233 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 TRMT1Q9NXH9 659 aaKnown RBP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 COX16Q9P0S2 106 aa13.58□□□□□ -0.24
VPS33A-202ENST00000451053 HBS1LQ9Y450 684 aaKnown RBP13.58□□□□□ -0.24
VPS33A-202ENST00000451053 KIF26AQ9ULI4 1882 aaPredicted RBP13.57□□□□□ -0.24
VPS33A-202ENST00000451053 BTNL10A8MVZ5 291 aa13.57□□□□□ -0.24
VPS33A-202ENST00000451053 M0QYT0 321 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms