RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 KPNB1Q14974 876 aaKnown RBP3.95□□□□□ -1.78
CLK1-204ENST00000432425 RBMS2Q15434 407 aaKnown RBP3.95□□□□□ -1.78
CLK1-204ENST00000432425 FAM110CQ1W6H9 321 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 SLC9C1Q4G0N8 1177 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 AASDHQ4L235 1098 aaPredicted RBP3.95□□□□□ -1.78
CLK1-204ENST00000432425 MRNIPQ6NTE8 343 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 KRT73Q86Y46 540 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 NAF1Q96HR8 494 aaKnown RBP3.95□□□□□ -1.78
CLK1-204ENST00000432425 CCDC136Q96JN2 1154 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 TBCBQ99426 244 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 COLEC11Q9BWP8 271 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 MTMR4Q9NYA4 1195 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 AFG3L2Q9Y4W6 797 aa3.95□□□□□ -1.78
CLK1-204ENST00000432425 A0A1W2PPC4 97 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 INPPL1O15357 1258 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 TMEM191BP0C7N4 346 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 ARP10275 920 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 DRD1P21728 446 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 HOXD9P28356 352 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 RAE1P78406 368 aaKnown RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 BFSP2Q13515 415 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 FHL3Q13643 280 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 CNGA3Q16281 694 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 C10orf25Q5T742 122 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 CCDC28AQ8IWP9 274 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 RNF152Q8N8N0 203 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 ZBTB9Q96C00 473 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 PRR11Q96HE9 360 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 EIF2AQ9BY44 585 aaKnown RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 STARD7Q9NQZ5 370 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 VPS4AQ9UN37 437 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 TTC34A8MYJ7 566 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 PMM2O15305 246 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 ZSCAN9O15535 394 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 USP12O75317 370 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 CD63P08962 238 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 SLC5A1P13866 664 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 TRIM27P14373 513 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 MST1P26927 711 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 SLC5A2P31639 672 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 CFHR1Q03591 330 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 KCNJ12Q14500 433 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 HLTFQ14527 1009 aaKnown RBP eCLIP3.94□□□□□ -1.78
CLK1-204ENST00000432425 DEF8Q6ZN54 512 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 ANKRD13BQ86YJ7 626 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 TXLNBQ8N3L3 684 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 GRAMD1AQ96CP6 724 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 SNX27Q96L92 541 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 WDR24Q96S15 920 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 EIF3CQ99613 913 aaKnown RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 RNF26Q9BY78 433 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 GJB4Q9NTQ9 266 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 TMEM184CQ9NVA4 438 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 ZMYND8Q9ULU4 1186 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 PCDHB2Q9Y5E7 798 aa3.94□□□□□ -1.78
CLK1-204ENST00000432425 HEMK1Q9Y5R4 338 aaPredicted RBP3.94□□□□□ -1.78
CLK1-204ENST00000432425 TTC3P53804 2025 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 ZMYM2Q9UBW7 1377 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 APAF1O14727 1248 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 KCNQ3O43525 872 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 MBPP02686 304 aaPredicted RBP3.93□□□□□ -1.78
CLK1-204ENST00000432425 MYL3P08590 195 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 CTSAP10619 480 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 CYP19A1P11511 503 aaPredicted RBP3.93□□□□□ -1.78
CLK1-204ENST00000432425 PRF1P14222 555 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 MMP8P22894 467 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 CPA2P48052 419 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 STIM1Q13586 685 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 ARL13BQ3SXY8 428 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 TMEM196Q5HYL7 178 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 TLDC1Q6P9B6 456 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 NRACQ8N912 160 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 PCDHAC1Q9H158 963 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 ABHD10Q9NUJ1 306 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 SEMA5BQ9P283 1151 aa3.93□□□□□ -1.78
CLK1-204ENST00000432425 TLR2O60603 784 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 MATN1P21941 496 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 DUSP1P28562 367 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 THBS4P35443 961 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 IGHMBP2P38935 993 aaKnown RBP3.92□□□□□ -1.78
CLK1-204ENST00000432425 GSTM5P46439 218 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 VPS41P49754 854 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 SEMA3BQ13214 749 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 PMS2P11Q13670 270 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 P3H1Q32P28 736 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 ZNF260Q3ZCT1 412 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 ZNF793Q6ZN11 406 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 KIAA0408Q6ZU52 694 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 C11orf96Q7Z7L8 435 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 SKAP1Q86WV1 359 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 PJA1Q8NG27 643 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 FCRL5Q96RD9 977 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 MAN2B2Q9Y2E5 1009 aa3.92□□□□□ -1.78
CLK1-204ENST00000432425 SIRT4Q9Y6E7 314 aaPredicted RBP3.92□□□□□ -1.78
CLK1-204ENST00000432425 MYMKA6NI61 221 aa3.91□□□□□ -1.78
CLK1-204ENST00000432425 RRHO14718 337 aa3.91□□□□□ -1.78
CLK1-204ENST00000432425 CBFA2T3O75081 653 aa3.91□□□□□ -1.78
CLK1-204ENST00000432425 NDST3O95803 873 aa3.91□□□□□ -1.78
CLK1-204ENST00000432425 PLAUP00749 431 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms