RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SLC1A1P43005 524 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 GCLMP48507 274 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CRYBB1P53674 252 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 NCKAP1LP55160 1127 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 RFX8Q6ZV50 586 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CLVS1Q8IUQ0 354 aaPredicted RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 FAM9CQ8IZT9 166 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 BBS5Q8N3I7 341 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 BORCS5Q969J3 196 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 CFAP57Q96MR6 1250 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 FAM161BQ96MY7 647 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 PURBQ96QR8 312 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 ERGIC2Q96RQ1 377 aa10.14□□□□□ -0.79
USP54-205ENST00000424265 MRPL47Q9HD33 250 aaKnown RBP10.14□□□□□ -0.79
USP54-205ENST00000424265 SGTAO43765 313 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 CTSHP09668 335 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 SMPD1P17405 629 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 IL32P24001 234 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 PTPN4P29074 926 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 CHN2P52757 468 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 MRPS6P82932 125 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 CRY1Q16526 586 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 ZC2HC1CQ53FD0 456 aaPredicted RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 SEL1L2Q5TEA6 688 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 KLHDC10Q6PID8 442 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 WDR49Q8IV35 697 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 COPS5Q92905 334 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 DNAJC19Q96DA6 116 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 CHP1Q99653 195 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 CGRRF1Q99675 332 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 PCDHA2Q9Y5H9 948 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 DNAJC25-GNG10A0A024R161 153 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 INHAP05111 366 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 TCEA1P23193 301 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 FCHO2Q0JRZ9 810 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 SNF8Q96H20 258 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 FMO2Q99518 471 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 OSBPL6Q9BZF3 934 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 ATP6V1HQ9UI12 483 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 GSTTP1A0A1W2PQM5 241 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 TRIM64A6NGJ6 449 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 TRIM64BA6NI03 449 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 RASGRF2O14827 1237 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 NCK2O43639 380 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 LRRC36Q1X8D7 754 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 NIPAL1Q6NVV3 410 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 SPATA20Q8TB22 786 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 PPP1R10Q96QC0 940 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 HTATIP2Q9BUP3 242 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 TBC1D10AQ9BXI6 508 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 TNFSF13BQ9Y275 285 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 PCDHB7Q9Y5E2 793 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 AK5Q9Y6K8 562 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 KANSL1LA0AUZ9 987 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 FUOMA2VDF0 154 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 THAP12O43422 761 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 CDK4P11802 303 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 ACAP1Q15027 740 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 STK11Q15831 433 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 MORN1Q5T089 497 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 C4orf22Q6V702 233 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 ATXN2LQ8WWM7 1075 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 SYN2Q92777 582 aaPredicted RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 ERP44Q9BS26 406 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 MYLK2Q9H1R3 596 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 DHX33Q9H6R0 707 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 GPRC5CQ9NQ84 441 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 PRDM5Q9NQX1 630 aaPredicted RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 PDGFCQ9NRA1 345 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 UVRAGQ9P2Y5 699 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 NXF1Q9UBU9 619 aaKnown RBP10.13□□□□□ -0.79
USP54-205ENST00000424265 STRIP2Q9ULQ0 834 aa10.13□□□□□ -0.79
USP54-205ENST00000424265 A0A087WZ62 844 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 A0A087X0B3 334 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 SPOPO43791 374 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 CYP1A2P05177 515 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 MRPS15P82914 257 aaKnown RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 CYP27A1Q02318 531 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 FMR1Q06787 632 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP54-205ENST00000424265 ARHGAP1Q07960 439 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 PTK2BQ14289 1009 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 CCDC25Q86WR0 208 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 NUDCD3Q8IVD9 361 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 FDXACB1Q9BRP7 624 aaPredicted RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 TBK1Q9UHD2 729 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 DAPK2Q9UIK4 370 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 MYH4Q9Y623 1939 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 ANKRD34BA5PLL1 514 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 VEGFBP49765 207 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 PTENP60484 403 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 DOCK1Q14185 1865 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 HADHQ16836 314 aaKnown RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 BBS9Q3SYG4 887 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 FIGNQ5HY92 759 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 IFNLR1Q8IU57 520 aaPredicted RBP10.12□□□□□ -0.79
USP54-205ENST00000424265 GATA6Q92908 595 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 FERD3LQ96RJ6 166 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 AIFM2Q9BRQ8 373 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 SHCBP1LQ9BZQ2 653 aa10.12□□□□□ -0.79
USP54-205ENST00000424265 APEX2Q9UBZ4 518 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms